Loading R/plot_violin.R +2 −1 Original line number Original line Diff line number Diff line Loading @@ -10,10 +10,11 @@ #' @param seu A complete Seurat object #' @param seu A complete Seurat object #' @param feature Gene name. Only one gene is allowed. #' @param feature Gene name. Only one gene is allowed. #' @param cell.types Cell types of interest. By default, all cell types are included. #' @param cell.types Cell types of interest. By default, all cell types are included. #' @param groups Groups to split the plot. Support multiple groups. #' @param groups Groups selected for plotting. Support multiple groups. #' @param add.dot Whether or not to add points on the violins. #' @param add.dot Whether or not to add points on the violins. #' @param font.size Font size for the labels. #' @param font.size Font size for the labels. #' @param pt.size Point size for the data points on the violin #' @param pt.size Point size for the data points on the violin #' @param split.by Group to split the gene expression. Only works when length(groups)==1. #' @return A ggplot object #' @return A ggplot object #' @export #' @export Loading man/complex_vlnplot_single.Rd +3 −1 Original line number Original line Diff line number Diff line Loading @@ -22,13 +22,15 @@ complex_vlnplot_single( \item{cell.types}{Cell types of interest. By default, all cell types are included.} \item{cell.types}{Cell types of interest. By default, all cell types are included.} \item{groups}{Groups to split the plot. Support multiple groups.} \item{groups}{Groups selected for plotting. Support multiple groups.} \item{add.dot}{Whether or not to add points on the violins.} \item{add.dot}{Whether or not to add points on the violins.} \item{font.size}{Font size for the labels.} \item{font.size}{Font size for the labels.} \item{pt.size}{Point size for the data points on the violin} \item{pt.size}{Point size for the data points on the violin} \item{split.by}{Group to split the gene expression. Only works when length(groups)==1.} } } \value{ \value{ A ggplot object A ggplot object Loading Loading
R/plot_violin.R +2 −1 Original line number Original line Diff line number Diff line Loading @@ -10,10 +10,11 @@ #' @param seu A complete Seurat object #' @param seu A complete Seurat object #' @param feature Gene name. Only one gene is allowed. #' @param feature Gene name. Only one gene is allowed. #' @param cell.types Cell types of interest. By default, all cell types are included. #' @param cell.types Cell types of interest. By default, all cell types are included. #' @param groups Groups to split the plot. Support multiple groups. #' @param groups Groups selected for plotting. Support multiple groups. #' @param add.dot Whether or not to add points on the violins. #' @param add.dot Whether or not to add points on the violins. #' @param font.size Font size for the labels. #' @param font.size Font size for the labels. #' @param pt.size Point size for the data points on the violin #' @param pt.size Point size for the data points on the violin #' @param split.by Group to split the gene expression. Only works when length(groups)==1. #' @return A ggplot object #' @return A ggplot object #' @export #' @export Loading
man/complex_vlnplot_single.Rd +3 −1 Original line number Original line Diff line number Diff line Loading @@ -22,13 +22,15 @@ complex_vlnplot_single( \item{cell.types}{Cell types of interest. By default, all cell types are included.} \item{cell.types}{Cell types of interest. By default, all cell types are included.} \item{groups}{Groups to split the plot. Support multiple groups.} \item{groups}{Groups selected for plotting. Support multiple groups.} \item{add.dot}{Whether or not to add points on the violins.} \item{add.dot}{Whether or not to add points on the violins.} \item{font.size}{Font size for the labels.} \item{font.size}{Font size for the labels.} \item{pt.size}{Point size for the data points on the violin} \item{pt.size}{Point size for the data points on the violin} \item{split.by}{Group to split the gene expression. Only works when length(groups)==1.} } } \value{ \value{ A ggplot object A ggplot object Loading
