update readme

help(package = plot1cell)

```

Many more functions will be added in the future package development. For questions, please raise an issue in this github page or contact <a href="https://humphreyslab.com">TheHumphreysLab</a>. 

### 8. Attributions

This package uses many methods from Seurat (https://github.com/satijalab/seurat) to process the data for ploting. The circlize and heatmap plots were generated by the circlize (https://github.com/jokergoo/circlize) and ComplexHeatmap (https://github.com/jokergoo/ComplexHeatmap) packages. The Upset plot was generated by the ComplexUpset package (https://github.com/krassowski/complex-upset). The violin plot to show multiple genes across groups was inspired by the codes provided here (https://github.com/ycl6/StackedVlnPlot). The package benefits from the following dependencies.

```

    Seurat,

    plotly,

    circlize,

    dplyr,

    ggplot2,

    MASS,

    scales,

    progress,

    RColorBrewer,

    grid,

    grDevices,

    biomaRt,

    reshape2,

    ggbeeswarm,

    purrr,

    ComplexUpset,

    matrixStats,

    DoubletFinder,

    methods,

    data.table,

    Matrix,

    hdf5r,

    loomR,

    GenomeInfoDb,

    EnsDb.Hsapiens.v86,

    cowplot,

    rlang,

    GEOquery,

    simplifyEnrichment,

    wordcloud,

    ComplexHeatmap

```