Loading R/plotting.R +1 −0 Original line number Diff line number Diff line Loading @@ -2358,6 +2358,7 @@ PlotKMEs <- function( #' @examples #' PlotDMEsVolcano PlotDMEsVolcano <- function( seurat_obj, DMEs, plot_labels=TRUE, mod_point_size=4, Loading docs/articles/differential_MEs.html +2 −0 Original line number Diff line number Diff line Loading @@ -206,6 +206,7 @@ INH-M17 2.034644e-02 0.24035946 0.589 0.557 3.662360e-01 INH-M17</code></pre> <p>We can visualize the results using the hdWGNCA function <code>PlotDMEsVolcano</code>.</p> <div class="sourceCode" id="cb6"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="fu"><a href="../reference/PlotDMEsVolcano.html">PlotDMEsVolcano</a></span><span class="op">(</span> <span class="va">seurat_obj</span>, <span class="va">DMEs</span>, wgcna_name <span class="op">=</span> <span class="st">'INH'</span> <span class="op">)</span></code></pre></div> Loading Loading @@ -236,6 +237,7 @@ EX.INH-M6 0 2.448315 0.877 0.209 0 INH-M6 EX</code></pre> <p>Now we can plot the results with <code>PlotDMEsVolcano</code></p> <div class="sourceCode" id="cb9"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="va">p</span> <span class="op"><-</span> <span class="fu"><a href="../reference/PlotDMEsVolcano.html">PlotDMEsVolcano</a></span><span class="op">(</span> <span class="va">seurat_obj</span>, <span class="va">DMEs_all</span>, wgcna_name <span class="op">=</span> <span class="st">'INH'</span>, plot_labels<span class="op">=</span><span class="cn">FALSE</span>, Loading vignettes/differential_MEs.Rmd +4 −0 Original line number Diff line number Diff line Loading @@ -93,6 +93,7 @@ We can visualize the results using the hdWGNCA function `PlotDMEsVolcano`. ```{r eval=FALSE} PlotDMEsVolcano( seurat_obj, DMEs, wgcna_name = 'INH' ) Loading @@ -102,6 +103,7 @@ PlotDMEsVolcano( ```{r eval=FALSE, echo=FALSE} p <- PlotDMEsVolcano( seurat_obj, DMEs, wgcna_name = 'INH' ) Loading Loading @@ -150,6 +152,7 @@ Now we can plot the results with `PlotDMEsVolcano` ```{r eval=FALSE} p <- PlotDMEsVolcano( seurat_obj, DMEs_all, wgcna_name = 'INH', plot_labels=FALSE, Loading @@ -164,6 +167,7 @@ p + facet_wrap(~group, ncol=3) ```{r eval=FALSE, echo=FALSE} p <- PlotDMEsVolcano( seurat_obj, DMEs_all, wgcna_name = 'INH', plot_labels=FALSE, Loading Loading
R/plotting.R +1 −0 Original line number Diff line number Diff line Loading @@ -2358,6 +2358,7 @@ PlotKMEs <- function( #' @examples #' PlotDMEsVolcano PlotDMEsVolcano <- function( seurat_obj, DMEs, plot_labels=TRUE, mod_point_size=4, Loading
docs/articles/differential_MEs.html +2 −0 Original line number Diff line number Diff line Loading @@ -206,6 +206,7 @@ INH-M17 2.034644e-02 0.24035946 0.589 0.557 3.662360e-01 INH-M17</code></pre> <p>We can visualize the results using the hdWGNCA function <code>PlotDMEsVolcano</code>.</p> <div class="sourceCode" id="cb6"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="fu"><a href="../reference/PlotDMEsVolcano.html">PlotDMEsVolcano</a></span><span class="op">(</span> <span class="va">seurat_obj</span>, <span class="va">DMEs</span>, wgcna_name <span class="op">=</span> <span class="st">'INH'</span> <span class="op">)</span></code></pre></div> Loading Loading @@ -236,6 +237,7 @@ EX.INH-M6 0 2.448315 0.877 0.209 0 INH-M6 EX</code></pre> <p>Now we can plot the results with <code>PlotDMEsVolcano</code></p> <div class="sourceCode" id="cb9"><pre class="downlit sourceCode r"> <code class="sourceCode R"><span class="va">p</span> <span class="op"><-</span> <span class="fu"><a href="../reference/PlotDMEsVolcano.html">PlotDMEsVolcano</a></span><span class="op">(</span> <span class="va">seurat_obj</span>, <span class="va">DMEs_all</span>, wgcna_name <span class="op">=</span> <span class="st">'INH'</span>, plot_labels<span class="op">=</span><span class="cn">FALSE</span>, Loading
vignettes/differential_MEs.Rmd +4 −0 Original line number Diff line number Diff line Loading @@ -93,6 +93,7 @@ We can visualize the results using the hdWGNCA function `PlotDMEsVolcano`. ```{r eval=FALSE} PlotDMEsVolcano( seurat_obj, DMEs, wgcna_name = 'INH' ) Loading @@ -102,6 +103,7 @@ PlotDMEsVolcano( ```{r eval=FALSE, echo=FALSE} p <- PlotDMEsVolcano( seurat_obj, DMEs, wgcna_name = 'INH' ) Loading Loading @@ -150,6 +152,7 @@ Now we can plot the results with `PlotDMEsVolcano` ```{r eval=FALSE} p <- PlotDMEsVolcano( seurat_obj, DMEs_all, wgcna_name = 'INH', plot_labels=FALSE, Loading @@ -164,6 +167,7 @@ p + facet_wrap(~group, ncol=3) ```{r eval=FALSE, echo=FALSE} p <- PlotDMEsVolcano( seurat_obj, DMEs_all, wgcna_name = 'INH', plot_labels=FALSE, Loading
