adding some dependencies

Package: hdWGCNA

Title: hdWGCNA

Version: 0.2.19

Version: 0.2.20

Authors@R: c(

    person("Sam", "Morabito", , "smorabit@uci.edu", role = c("aut", "cre"),

           comment = c(ORCID = "0000-0002-7768-4856")),

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.1.2

URL: https://smorabit.github.io/hdWGCNA/

Imports: WGCNA, Seurat, Matrix, harmony, igraph, ggplot2, dplyr

Imports: WGCNA, Seurat, Matrix, harmony, igraph, ggplot2, dplyr, tester, qlcMatrix

Suggests: testthat (>= 3.0.0)

Config/testthat/edition: 3

Depends: 

# hdWGCNA 0.2.20 (2023-08-17)

## Added

- None.

## Changes

- Dependency for tester pacakge.

# hdWGCNA 0.2.19 (2023-06-13)

## Added

- None.

  # intersect with the markers table if it's provided:

  major_marker_list <- lapply(names(major_list), function(cur_group){

    cur_isos <- major_list[[cur_group]]

    cur_genes <- unique(do.call(rbind, strsplit(cur_isos, '[.]'))[,1])

    cur_genes <- unique(do.call(rbind, strsplit(cur_isos, isoform_delim))[,1])

    cur_genes <- subset(cluster_markers, cluster == cur_group & gene %in% cur_genes) %>% .$gene

    subset(iso_df, gene %in% cur_genes & iso %in% cur_isos) %>% .$iso

  })

#' @param ignore logical indicating whether or not to ignore error message about reassigning non-grey features

#' @param wgcna_name The name of the hdWGCNA experiment in the seurat_obj@misc slot

#' @details

#' ReassignModules reassigs features with negative kMEs in their assigned module to the

#' ReassignModules reassigns features with negative kMEs in their assigned module to the

#' module that had the highest kME for that feature. Alternatively, this function

#' can manually assign features to different modules, which can be helpful if

#' certain genes of interest are assigned to the grey module. We generally do not