update to isoseq

export(EnrichrDotPlot)

export(FindAllDMEs)

export(FindDMEs)

export(FindMajorIsoforms)

export(GetActiveWGCNA)

export(GetAvgModuleExpr)

export(GetDatExpr)

import(Seurat)

import(WGCNA)

import(harmony)

importFrom(Matrix,colSums)

importFrom(Matrix,rowSums)

importFrom(dplyr,"%>%")

importFrom(dplyr,count)

importFrom(dplyr,distinct)

importFrom(dplyr,filter)

importFrom(dplyr,group_by)

importFrom(dplyr,mutate_at)

importFrom(dplyr,n_distinct)

importFrom(dplyr,pull)

importFrom(dplyr,rename_)

importFrom(dplyr,summarise)

importFrom(dplyr,vars)

importFrom(magrittr,"%<>%")

importFrom(magrittr,extract)

importFrom(methods,is)

importFrom(purrr,map)

importFrom(purrr,map_int)

importFrom(stats,setNames)

importFrom(tester,is_numeric_dataframe)

importFrom(tester,is_numeric_matrix)

#' @param corOptions 	character string specifying additional arguments to be passed to the function given by corFnc. Use "use = 'p', method = 'spearman'" to obtain Spearman correlation. Use "use = 'p'" to obtain Pearson correlation.

#' @param harmonized logical determining whether to use harmonized MEs for kME calculation

#' @param assay Assay in seurat_obj containing expression information.

#' @param slot Slot in specified, default to normalized 'data' slot.

#' @param slot Slot in seurat_obj, default to normalized 'data' slot.

#' @param sparse logical indicating whether or not to run the correlation using a sparse matrix.

#' @param reassign_modules logical indicating whether or not to reassign genes to different co-expression modules if their kME value in the assigned module is negative.

#' @param wgcna_name The name of the hdWGCNA experiment in the seurat_obj@misc slot