added google drive link to tutorial data

YEAR: 2022

COPYRIGHT HOLDER: hdWGCNA authors

</h3>

<p>For the purpose of this tutorial, we provide a processed Seurat object of the control human brains from the <a href="https://www.nature.com/articles/s41591-019-0695-9" class="external-link">Zhou et al 2020 study</a>.</p>

<div class="sourceCode" id="cb1"><pre class="sourceCode bash"><code class="sourceCode bash"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">wget</span> https://swaruplab.bio.uci.edu/public_data/Zhou_2020.rds</span></code></pre></div>

<details><summary>

Download not working?

</summary>

Please try downloading the file from this <a href="https://drive.google.com/drive/folders/1yxolklYrwFB9Snwr2Dp_W2eunBxaol4A?usp=sharing" class="external-link">Google Drive link</a> instead.

</details>

</div>

<div class="section level3">

<h3 id="load-the-dataset-and-required-libraries">Load the dataset and required libraries<a class="anchor" aria-label="anchor" href="#load-the-dataset-and-required-libraries"></a>

<span class="fu"><a href="https://rdrr.io/r/base/Random.html" class="external-link">set.seed</a></span><span class="op">(</span><span class="fl">12345</span><span class="op">)</span></code></pre></div>

<p>Download the tutorial dataset:</p>

<div class="sourceCode" id="cb2"><pre class="sourceCode bash"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="fu">wget</span> https://swaruplab.bio.uci.edu/public_data/Zhou_2020.rds</span></code></pre></div>

<div class="section level2">

<details><summary>

Download not working?

</summary>

Please try downloading the file from this <a href="https://drive.google.com/drive/folders/1yxolklYrwFB9Snwr2Dp_W2eunBxaol4A?usp=sharing" class="external-link">Google Drive link</a> instead.

</details><div class="section level2">

<h2 id="example-1-consensus-network-analysis-of-astrocytes-from-male-and-female-donors">Example 1: Consensus network analysis of astrocytes from male and female donors<a class="anchor" aria-label="anchor" href="#example-1-consensus-network-analysis-of-astrocytes-from-male-and-female-donors"></a>

</h2>

<p>In this section, we perform consensus network analysis between male and female donors from the Zhou <em>et al.</em> snRNA-seq dataset. We will also follow the “standard” workflow (not consensus), and compare the resulting gene module assignments.</p>

  projecting_modules: projecting_modules.html

  projecting_modules_cross: projecting_modules_cross.html

  sctransform: sctransform.html

last_built: 2022-09-23T20:41Z

last_built: 2022-09-25T17:24Z

urls:

  reference: https://smorabit.github.io/hdWGCNA/reference

  article: https://smorabit.github.io/hdWGCNA/articles

<span class="r-out co"><span class="r-pr">#&gt;</span>     }</span>

<span class="r-out co"><span class="r-pr">#&gt;</span>     out</span>

<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>

<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;bytecode: 0x7fdb2570c568&gt;</span>

<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;bytecode: 0x7f9ec904d600&gt;</span>

<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: namespace:hdWGCNA&gt;</span>

</code></pre></div>

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