docstring for PlotKMEs/

identifies robust modules of inerconnected genes, and provides biological

context for these modules. hdWGCNA is directly compatible with

[Seurat](https://satijalab.org/seurat/index.html) objects, one of the most ubiquitous

formats for single-cell data. Check out the [hdWGCNA basics tutorial](articles/basic_tutorial.html) to get started.

formats for single-cell data. Check out the [hdWGCNA basics tutorial](https://smorabit.github.io/hdWGCNA/articles/basic_tutorial.html) to get started.

## Installation

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<p><strong>Note:</strong> hdWGCNA is under active development, so you will likely run into errors if you choose to use hdWGCNA before its first stable release.</p>

<p>hdWGCNA, formerly known as scWGCNA, is an R package for performing weighted gene co-expression network analysis <a href="https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/" class="external-link">(WGCNA)</a> in high dimensional data such as single-cell RNA-seq or spatial transcriptomics. hdWGCNA constructs co-expression networks in a cell-type-specific manner, identifies robust modules of inerconnected genes, and provides biological context for these modules. hdWGCNA is directly compatible with <a href="https://satijalab.org/seurat/index.html" class="external-link">Seurat</a> objects, one of the most ubiquitous formats for single-cell data. Check out the <a href="articles/basic_tutorial.html">hdWGCNA basics tutorial</a> to get started.</p>

<p>hdWGCNA, formerly known as scWGCNA, is an R package for performing weighted gene co-expression network analysis <a href="https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/" class="external-link">(WGCNA)</a> in high dimensional data such as single-cell RNA-seq or spatial transcriptomics. hdWGCNA constructs co-expression networks in a cell-type-specific manner, identifies robust modules of inerconnected genes, and provides biological context for these modules. hdWGCNA is directly compatible with <a href="https://satijalab.org/seurat/index.html" class="external-link">Seurat</a> objects, one of the most ubiquitous formats for single-cell data. Check out the <a href="https://smorabit.github.io/hdWGCNA/articles/basic_tutorial.html" class="external-link">hdWGCNA basics tutorial</a> to get started.</p>

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<h2 id="installation">Installation<a class="anchor" aria-label="anchor" href="#installation"></a>

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