bugfix

Package: hdWGCNA

Title: hdWGCNA

Version: 0.2.01

Version: 0.2.02

Authors@R: c(

    person("Sam", "Morabito", , "smorabit@uci.edu", role = c("aut", "cre"),

           comment = c(ORCID = "0000-0002-7768-4856")),

# hdWGCNA 0.2.02 (2022-11-01)

## Added

- None

## Changes

- New warning in `SetupForWGCNA` if the user selects a very small number of genes.

- `MetaspotsByGroups` uses sparse matrix format internally.

# hdWGCNA 0.2.01 (2022-10-06)

## Added

- None

  agg_X <- do.call(rbind, lapply(1:length(tmp), function(k){tmp[[k]][[3]]}))

  # experimental

  agg_X <- as(agg_X, 'sparseMatrix')

  # print(length(tmp))

  # print(dim(agg_X))

  # transpose expression matrix:

  agg_X <- t(agg_X)

  print(class(agg_X))

  agg_X <- Matrix::t(agg_X)

  colnames(agg_X) <- bcs

  # get metadata:

    seurat_obj <- SetWGCNAGenes(seurat_obj, gene_list=features, wgcna_name=wgcna_name)

  }

  # give the user a warning if there's too few genes (under 200?)

  genes_use <- GetWGCNAGenes(seurat_obj, wgcna_name=wgcna_name)

  if(length(genes_use) < 500){

    warning(paste0(length(genes_use), ' features selected. You may wish to change the settings to include more features in your analysis.'))

  }

  if(!is.null(metacell_location)){

    if(!(metacell_location %in% names(seurat_obj@misc))){

      stop('metacell_location not found in seurat_obj@misc')

      </button>

      <span class="navbar-brand">

        <a class="navbar-link" href="https://smorabit.github.io/hdWGCNA/index.html">hdWGCNA</a>

        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.2.01</span>

        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.2.02</span>

      </span>

    </div>