Commit 254024b6 authored by smorabit's avatar smorabit
Browse files

changed the theme

parent c91c69e7
Loading
Loading
Loading
Loading
+1 −1
Original line number Diff line number Diff line
@@ -5,7 +5,7 @@ Authors@R: c(
    person("Samuel", "Morabito", , "smorabit@uci.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7768-4856"))
  )
Description: What the package does (one paragraph).
Description: scWGCNA is an R package for performing weighted gene co-expression network analysis in single-cell RNA-seq data.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
+12 −5
Original line number Diff line number Diff line
@@ -3,7 +3,8 @@ title: scWGCNA
url: https://smorabit.github.io/scWGCNA/

template:
  bootstrap: 5
  params:
    bootswatch: flatly
  
home:
  title: scWGCNA
@@ -40,13 +41,19 @@ navbar:
    - text: Enrichment analysis
      href: articles/enrichment_analysis.html
    - text: -------
    - text: Exploring modules in external datasets
    - text: Projecting modules to new datasets
      href: articles/projecting_modules.html
    - text: Cross-species and cross-modality analysis
      href: articles/projecting_modules_cross.html
    - text: Module preservation and reproducibility
      href: articles/module_preservation.html
    - text: -------
    - text: Advanced topics
    - text: Consensus WGCNA
    - text: Consensus network analysis
      href: articles/consensus_wgcna.html
    - text: Motif analysis
      href: articles/motif_analysis.html
    - text: Projecting modules onto new datasets
      href: articles/projecting_modules.html
    - text: -------
    - text: Other
    - text: Module customization
+109 −61
Original line number Diff line number Diff line
@@ -4,7 +4,7 @@
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Page not found (404) • scWGCNA</title>
<!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="https://smorabit.github.io/scWGCNA/favicon-16x16.png">
<link rel="icon" type="image/png" sizes="32x32" href="https://smorabit.github.io/scWGCNA/favicon-32x32.png">
@@ -12,94 +12,141 @@
<link rel="apple-touch-icon" type="image/png" sizes="120x120" href="https://smorabit.github.io/scWGCNA/apple-touch-icon-120x120.png">
<link rel="apple-touch-icon" type="image/png" sizes="76x76" href="https://smorabit.github.io/scWGCNA/apple-touch-icon-76x76.png">
<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="https://smorabit.github.io/scWGCNA/apple-touch-icon-60x60.png">
<script src="https://smorabit.github.io/scWGCNA/deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<link href="https://smorabit.github.io/scWGCNA/deps/bootstrap-5.1.0/bootstrap.min.css" rel="stylesheet">
<script src="https://smorabit.github.io/scWGCNA/deps/bootstrap-5.1.0/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous">
<!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/flatly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous">
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="https://smorabit.github.io/scWGCNA/bootstrap-toc.css">
<script src="https://smorabit.github.io/scWGCNA/bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
<!-- bootstrap-toc --><script src="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="https://smorabit.github.io/scWGCNA/pkgdown.js"></script><meta property="og:title" content="Page not found (404)">
<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="https://smorabit.github.io/scWGCNA/pkgdown.css" rel="stylesheet">
<script src="https://smorabit.github.io/scWGCNA/pkgdown.js"></script><meta property="og:title" content="Page not found (404)">
<meta property="og:image" content="https://smorabit.github.io/scWGCNA/logo.png">
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body>
    <a href="https://smorabit.github.io/scWGCNA/#main" class="visually-hidden-focusable">Skip to contents</a>
    

    <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
    
    <a class="navbar-brand me-2" href="https://smorabit.github.io/scWGCNA/index.html">scWGCNA</a>

    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.0.0.9000</small>

    
    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
      <span class="navbar-toggler-icon"></span>
<body data-spy="scroll" data-target="#toc">
    

    <div class="container template-title-body">
      <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
  <div class="container">
    <div class="navbar-header">
      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
        <span class="sr-only">Toggle navigation</span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
      </button>

    <div id="navbar" class="collapse navbar-collapse ms-3">
      <ul class="navbar-nav me-auto">
<li class="nav-item">
  <a class="nav-link" href="https://smorabit.github.io/scWGCNA/articles/scWGCNA.html">Get started</a>
</li>
<li class="nav-item dropdown">
  <a href="https://smorabit.github.io/scWGCNA/#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-vignettes">Vignettes</a>
  <div class="dropdown-menu" aria-labelledby="dropdown-vignettes">
    <h6 class="dropdown-header" data-toc-skip>Core functionality</h6>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/basic_tutorial.html">scWGCNA basics</a>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/network_visualizations.html">Network visualization</a>
    <div class="dropdown-divider"></div>
    <h6 class="dropdown-header" data-toc-skip>Biological context for co-expression modules</h6>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/module_trait_correlation.html">Module trait correlation</a>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/enrichment_analysis.html">Enrichment analysis</a>
    <div class="dropdown-divider"></div>
    <h6 class="dropdown-header" data-toc-skip>Advanced topics</h6>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/consensus_wgcna.html">Consensus WGCNA</a>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/motif_analysis.html">Motif analysis</a>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/projecting_modules.html">Projecting modules onto new datasets</a>
    <div class="dropdown-divider"></div>
    <h6 class="dropdown-header" data-toc-skip>Other</h6>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/customization.html">Module customization</a>
    <div class="dropdown-divider"></div>
    <a class="dropdown-item" href="https://smorabit.github.io/scWGCNA/articles/index.html">All vignettes</a>
      <span class="navbar-brand">
        <a class="navbar-link" href="https://smorabit.github.io/scWGCNA/index.html">scWGCNA</a>
        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.0.0.9000</span>
      </span>
    </div>

    <div id="navbar" class="navbar-collapse collapse">
      <ul class="nav navbar-nav">
<li>
  <a href="https://smorabit.github.io/scWGCNA/articles/scWGCNA.html">Get started</a>
</li>
<li class="dropdown">
  <a href="https://smorabit.github.io/scWGCNA/#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
    Vignettes
     
    <span class="caret"></span>
  </a>
  <ul class="dropdown-menu" role="menu">
<li class="dropdown-header">Core functionality</li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/basic_tutorial.html">scWGCNA basics</a>
    </li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/network_visualizations.html">Network visualization</a>
    </li>
    <li class="divider">
    </li>
<li class="dropdown-header">Biological context for co-expression modules</li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/module_trait_correlation.html">Module trait correlation</a>
    </li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/enrichment_analysis.html">Enrichment analysis</a>
    </li>
    <li class="divider">
    </li>
<li class="dropdown-header">Exploring modules in external datasets</li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/projecting_modules.html">Projecting modules to new datasets</a>
    </li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/projecting_modules_cross.html">Cross-species and cross-modality analysis</a>
    </li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/module_preservation.html">Module preservation and reproducibility</a>
    </li>
    <li class="divider">
    </li>
<li class="nav-item">
  <a class="nav-link" href="https://smorabit.github.io/scWGCNA/reference/index.html">Reference</a>
<li class="dropdown-header">Advanced topics</li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/consensus_wgcna.html">Consensus network analysis</a>
    </li>
<li class="nav-item">
  <a class="nav-link" href="https://smorabit.github.io/scWGCNA/news/index.html">News</a>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/motif_analysis.html">Motif analysis</a>
    </li>
    <li class="divider">
    </li>
<li class="dropdown-header">Other</li>
    <li>
      <a href="https://smorabit.github.io/scWGCNA/articles/customization.html">Module customization</a>
    </li>
    <li class="divider">
    </li>
<li>
      <a href="https://smorabit.github.io/scWGCNA/articles/index.html">All vignettes</a>
    </li>
  </ul>
<form class="form-inline my-2 my-lg-0" role="search">
        <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off">
</form>

      <ul class="navbar-nav"></ul>
</li>
<li>
  <a href="https://smorabit.github.io/scWGCNA/reference/index.html">Reference</a>
</li>
<li>
  <a href="https://smorabit.github.io/scWGCNA/news/index.html">News</a>
</li>
      </ul>
<ul class="nav navbar-nav navbar-right"></ul>
</div>
<!--/.nav-collapse -->
  </div>
<!--/.container -->
</div>
<!--/.navbar -->

      
  </div>
</nav><div class="container template-title-body">
<div class="row">
  <main id="main" class="col-md-9"><div class="page-header">
      <img src="https://smorabit.github.io/scWGCNA/logo.png" class="logo" alt=""><h1>Page not found (404)</h1>

      </header><div class="row">
  <div class="contents col-md-9">
    <div class="page-header">
      <h1>Page not found (404)</h1>
    </div>

Content not found. Please use links in the navbar.

  </main>
  </div>

  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
    <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
    </nav>
</div>

    <footer><div class="pkgdown-footer-left">
</div>



      <footer><div class="copyright">
  <p></p>
<p>Developed by <a href="https://smorabit.github.io" class="external-link">Samuel Morabito</a>.</p>
</div>

<div class="pkgdown-footer-right">
<div class="pkgdown">
  <p></p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.2.</p>
</div>
@@ -111,5 +158,6 @@ Content not found. Please use links in the navbar.


  

  </body>
</html>
+94 −56

File changed.

Preview size limit exceeded, changes collapsed.

+110 −67

File changed.

Preview size limit exceeded, changes collapsed.

Loading