Commits · ab5879fb00a80511fccb565a04ea5777d5c6554c · github_fork / Chromap

Browse files

Jul 27, 2022
- Fix a bug in candidate sorting. · ab5879fb
  Haowen Zhang authored Jul 18, 2022
  
  ab5879fb
- Introduce DraftMapping. · 505e2bac
  Haowen Zhang authored Jul 18, 2022
  
  505e2bac
- Refactor code. · f3be2b46
  Haowen Zhang authored Jul 18, 2022
  f3be2b46
- Reorder the funcs to match the declaration. · e26862e4
  Haowen Zhang authored Jul 18, 2022
  
  e26862e4
- Func to get candidate rid and position. · 818e4b44
  Haowen Zhang authored Jul 18, 2022
  
  818e4b44
- Refactor VerifyCandidates. · 05705cec
  Haowen Zhang authored Jul 18, 2022
  05705cec
- Func to validate candidate position range. · 411e025a
  Haowen Zhang authored Jul 18, 2022
  
  411e025a
- Func to get a mapping supported by all minimizers. · c5a8ca7e
  Haowen Zhang authored Jul 15, 2022
  
  c5a8ca7e
Jul 20, 2022
- Fix a bug for hashing 32 bp sequences. · 7f283b6f
  Haowen Zhang authored Jul 19, 2022
  
  7f283b6f
May 09, 2022
- Update the links of the badges. · e8851a40
  Haowen Zhang authored May 08, 2022
  
  e8851a40
May 05, 2022
- Update version. · a97dfe22
  Haowen Zhang authored May 04, 2022
  
  View commits for tag v0.2.3 v0.2.3
  
  a97dfe22
- Better variable names. · d389ea32
  Haowen Zhang authored Apr 26, 2022
  
  d389ea32
May 04, 2022
- Update badges · d7f5b552
  Haowen Zhang authored May 04, 2022
  
  d7f5b552
- Remove manual line breaking · 7f0557d7
  Haowen Zhang authored May 04, 2022
  
  7f0557d7
Apr 21, 2022
- Reset range to default when the format is empty. · e8c94fc5
  Haowen Zhang authored Apr 20, 2022
  
  e8c94fc5
- Skip parsing when the format is empty. · eb489633
  Haowen Zhang authored Apr 20, 2022
  
  eb489633
- Explicitly use default range to construct batch. · 31537f08
  Haowen Zhang authored Apr 20, 2022
  
  31537f08
- Require effective range as SequenceBatch parameter. · da19c8cb
  Haowen Zhang authored Apr 20, 2022
  da19c8cb
- Add more comment for strand. · 97b0b0d2
  Haowen Zhang authored Apr 20, 2022
  
  97b0b0d2
- Rename IsFullRange() and make it private. · 0c830c66
  Haowen Zhang authored Apr 20, 2022
  
  0c830c66
- Use a char for range strand. · 28c58f79
  Haowen Zhang authored Apr 20, 2022
  
  28c58f79
- Remove a useless class variable for ranges. · 3639e685
  Haowen Zhang authored Apr 20, 2022
  
  3639e685
- Format code. · 5710d90e
  Haowen Zhang authored Apr 20, 2022
  
  5710d90e
- Use multiple read format fields to specify non-consecutive sequence. Fix several bugs in parsing. · 34905b18
  Li authored Apr 20, 2022
  
  34905b18
- Add more space and brackets. · de5470ae
  Haowen Zhang authored Apr 19, 2022
  
  de5470ae
- Rename sequence effective range variables. · de54d9b2
  Haowen Zhang authored Apr 19, 2022
  
  de54d9b2
- Make char int conversion functions free. · c7ba742a
  Haowen Zhang authored Apr 19, 2022
  c7ba742a
- Update README · 2169e0f5
  Li authored Apr 18, 2022
  
  2169e0f5
- Allow the specification of non-consecutive sequence range usage through --read-format · 7556c47b
  Li authored Apr 18, 2022
  
  7556c47b
Apr 15, 2022
- Update version. · 148082f7
  Haowen Zhang authored Apr 15, 2022
  
  View commits for tag v0.2.2 v0.2.2
  
  148082f7
- Fix a bug and format code. · 854db086
  Haowen Zhang authored Apr 14, 2022
  
  854db086
- Fix an issue of missing adapter trimming due to tandem repeat near read start. · a094dd49
  Li authored Apr 11, 2022
  
  a094dd49
- Fix a typo when doing the final trimming · 4b2aba6c
  Li authored Apr 11, 2022
  
  4b2aba6c
- Allow containment in adapter trimming · d9758ea8
  Li authored Apr 03, 2022
  
  d9758ea8
Mar 29, 2022
- Improve code readability. · bfb95030
  Li authored Mar 27, 2022
  
  bfb95030
- Properly handle the Ns in the barcode during barcode correction. · 09e23ef1
  Li authored Mar 27, 2022
  
  09e23ef1
- Replace N by T if reverse complemented to make sure the results is consistent... · d5359b7d
  Li authored Mar 25, 2022
  d5359b7d
- Do not do the reverse-complement operation on the quality score when reversing. · 59e405c3
  Li authored Mar 25, 2022
  
  59e405c3
Mar 25, 2022
- Introduce an in memory mapping layout. · 9b64a21c
  Haowen Zhang authored Mar 24, 2022
  9b64a21c
- Add missing headers. · 0193ab5a
  Haowen Zhang authored Mar 24, 2022
  
  0193ab5a

Admin message

Commits · ab5879fb00a80511fccb565a04ea5777d5c6554c