Commits · 87d7e9938de9fedb1c4686ec54a9ed1a8caa69da · github_fork / Chromap

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Jan 29, 2022
- Fix uninitialized effective lengths for ref. · 87d7e993
  Haowen Zhang authored Jan 27, 2022
  
  87d7e993
Jan 17, 2022
- Update version. · 60088210
  Haowen Zhang authored Jan 17, 2022
  
  View commits for tag v0.1.5 v0.1.5
  
  60088210
Jan 15, 2022
- Compute sequence length using cigar and trim it. · fd4f5d61
  Haowen Zhang authored Jan 14, 2022
  
  fd4f5d61
Jan 09, 2022
- Change the name of OutputTools to MappingWriter. · 072fa11b
  Haowen Zhang authored Jan 06, 2022
  
  072fa11b
- Move reduce pair candidate to candidate processor. · 107b62ee
  Haowen Zhang authored Jan 06, 2022
  
  107b62ee
- Introduce FeatureBarcodeMatrix. · b98c2a2d
  Haowen Zhang authored Jan 06, 2022
  
  b98c2a2d
- Separate headers for mapping and index parameters. · 2dd08a6c
  Haowen Zhang authored Jan 04, 2022
  
  2dd08a6c
- Make static functions free. · 32ae269d
  Haowen Zhang authored Jan 04, 2022
  
  32ae269d
Jan 04, 2022
- Add test on macOS. · b2952bf0
  Haowen Zhang authored Jan 03, 2022
  
  b2952bf0
Dec 30, 2021
- Add missing shared variables in omp region. · 6a8adbfc
  Haowen Zhang authored Dec 29, 2021
  6a8adbfc
Dec 27, 2021
- Remove unused parameters for index construction. · 266c513a
  Haowen Zhang authored Dec 26, 2021
  
  266c513a
- Introduce CandidateProcessor. · ae75498b
  Haowen Zhang authored Dec 26, 2021
  ae75498b
- Refactor the code of Index. · d4ecc759
  Haowen Zhang authored Dec 24, 2021
  d4ecc759
- Separate header for Candidate. · 7b69c877
  Haowen Zhang authored Dec 24, 2021
  
  7b69c877
- Separate single and paired end mapping metadata. · 8ebe012e
  Haowen Zhang authored Dec 22, 2021
  
  8ebe012e
- Move out feature matrix funcs in OutputTools. · 267c10c2
  Haowen Zhang authored Dec 22, 2021
  267c10c2
- Format the code and improve comments. · 1cba6dfc
  Haowen Zhang authored Dec 22, 2021
  
  1cba6dfc
Dec 24, 2021
- Fix version number · bef82e5d
  Li authored Dec 23, 2021
  
  bef82e5d
- Add the strand field in the --read-format option. · b9de5fcd
  Li authored Dec 23, 2021
  
  b9de5fcd
Dec 21, 2021
- Update the man page and the version. · d0c57d40
  Haowen Zhang authored Dec 20, 2021
  
  View commits for tag v0.1.4 v0.1.4
  
  d0c57d40
- Remove header dependency for now. · 0f3b6bd2
  Haowen Zhang authored Dec 20, 2021
  
  0f3b6bd2
- Forgot to include a header. · da7e32e4
  Li authored Dec 20, 2021
  
  da7e32e4
- Format code and change class variable names. · 480a054a
  Haowen Zhang authored Dec 20, 2021
  
  480a054a
- Update README.md · 21b8b9bb
  Haowen Zhang authored Dec 20, 2021
  
  21b8b9bb
- Removed a comment line. · 1a380966
  Haowen Zhang authored Dec 20, 2021
  
  1a380966
- Update README. Code refactoring. · 92372b20
  Li authored Dec 20, 2021
  
  92372b20
- Code refactoring · d26c0d4c
  Li authored Dec 20, 2021
  
  d26c0d4c
- Use another way to handle string in khash. Fix a small issue of initialization in mmcache · c1f625c9
  Li authored Dec 18, 2021
  
  c1f625c9
- Fix several issues in the output format of single-end data. · c10a4c30
  Li authored Dec 13, 2021
  
  c10a4c30
- Fix a bug with the bit operation · 9ca20e7e
  Li authored Dec 12, 2021
  
  9ca20e7e
- Preliminary implementation of barcode translation. · 851d1a25
  Li authored Dec 12, 2021
  
  851d1a25
Dec 17, 2021
- Update LICENSE · 847cdd7c
  Li Song authored Dec 16, 2021
  
  847cdd7c
- Update LICENSE · efda8162
  Li Song authored Dec 16, 2021
  
  efda8162
- Update LICENSE · cbcdef88
  Haowen Zhang authored Dec 16, 2021
  
  cbcdef88
Dec 09, 2021
- Only warn the users when whitelist is NA. · ff8fb17e
  Haowen Zhang authored Dec 08, 2021
  
  ff8fb17e
Dec 08, 2021
- Make num_reference_sequences unconst and shared in omp to compile. · 114d6754
  Haowen Zhang authored Dec 02, 2021
  
  114d6754
- Reduce the number of function parameters. · 935d24df
  Haowen Zhang authored Dec 02, 2021
  935d24df
- More refactors. · 8f6e6b3a
  Haowen Zhang authored Dec 01, 2021
  8f6e6b3a
- First step towards this monster. · 6e81245c
  Haowen Zhang authored Nov 28, 2021
  6e81245c
- Move temp mapping file handle to a separate header. · 5ceb935b
  Haowen Zhang authored Nov 28, 2021
  
  5ceb935b

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Commits · 87d7e9938de9fedb1c4686ec54a9ed1a8caa69da