Commits · 860b704438aa17feb010d61396c9c4fad6e17455 · github_fork / Chromap

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Sep 07, 2021
- Merge pull request #28 from haowenz/li_dev2 · 860b7044
  Haowen Zhang authored Sep 06, 2021
  860b7044
- Clean up the code · 0293ab53
  Li authored Sep 06, 2021
  
  0293ab53
Sep 06, 2021
- Fix a bug causing cache store empty entries. · 077b2e50
  Li authored Sep 05, 2021
  
  077b2e50
Sep 05, 2021
- Improve cache efficiency · 7d41b617
  Li authored Sep 04, 2021
  
  7d41b617
Aug 22, 2021
- Update .travis.yml · f1cf768b
  Haowen Zhang authored Aug 22, 2021
  
  f1cf768b
- Update .travis.yml · 723a6d5f
  Haowen Zhang authored Aug 22, 2021
  
  723a6d5f
Aug 21, 2021
- Merge pull request #26 from haowenz/custom_read_format · 0e5159f8
  Haowen Zhang authored Aug 20, 2021
  0e5159f8
- Move read format parser to a function. · 817266a2
  Li authored Aug 20, 2021
  
  817266a2
- Merge pull request #25 from haowenz/custom_read_format · 1daabe5c
  Haowen Zhang authored Aug 20, 2021
  1daabe5c
- Add version. · 957a92b4
  Haowen Zhang authored Aug 20, 2021
  
  957a92b4
Aug 04, 2021
- Update README.md · b956460c
  Li Song authored Aug 03, 2021
  
  b956460c
- Update README.md · 4bed9c05
  Li Song authored Aug 03, 2021
  
  4bed9c05
- Update readme · 3bcd01ff
  Li authored Aug 03, 2021
  
  3bcd01ff
Aug 03, 2021
- Fixing an issue of hash table definition for barcode whitelist · 6b25bae9
  Li authored Aug 02, 2021
  
  6b25bae9
- Update readme · 3524e0e4
  Li authored Aug 02, 2021
  
  3524e0e4
- Support barcode size up to 32bp · 6e87d935
  Li authored Aug 02, 2021
  
  6e87d935
- Add the option --read-format for custom read and barcode format. · 636bee27
  Li authored Aug 02, 2021
  
  636bee27
Jul 04, 2021
- Merge pull request #16 from haowenz/li_dev2 · 6e97125b
  Haowen Zhang authored Jul 03, 2021
  6e97125b
Jul 03, 2021
- Less stringent MAPQ for single-end reads · 844c9e57
  Li authored Jul 03, 2021
  
  844c9e57
- Less stringent MAPQ for single-end reads · 82baf3ae
  Li authored Jul 03, 2021
  
  82baf3ae
Jun 24, 2021
- Merge pull request #12 from haowenz/li_dev2 · 45de7b40
  Haowen Zhang authored Jun 23, 2021
  45de7b40
- Fix an issue of wrong start position for reverse alignment in SAM format · 363fb277
  Li authored Jun 23, 2021
  
  363fb277
Jun 22, 2021
- Update README.md · 9cf6cefe
  Li Song authored Jun 21, 2021
  
  9cf6cefe
- Update README.md · 38a15845
  Li Song authored Jun 21, 2021
  
  38a15845
- Merge pull request #8 from haowenz/li_dev2 · e79d3b79
  Li Song authored Jun 21, 2021
  e79d3b79
- Fix a bug when not read mapped. · 89924e57
  Li authored Jun 21, 2021
  
  89924e57
Jun 21, 2021
- Update README.md · 80f75ed0
  Li Song authored Jun 20, 2021
  
  80f75ed0
- Update README.md · 924a432a
  Haowen Zhang authored Jun 20, 2021
  
  924a432a
- Compute positions before deleting cigars · ceaecfa1
  Haowen Zhang authored Jun 20, 2021
  
  ceaecfa1
- Output seq and qual in SAM · f1027656
  Haowen Zhang authored Jun 20, 2021
  
  f1027656
Jun 20, 2021
- Fix a memory leak when outputing SAM · c5947019
  Haowen Zhang authored Jun 20, 2021
  
  c5947019
- Merge branch 'master' of github.com:haowenz/chromap · e006b5b0
  Haowen Zhang authored Jun 20, 2021
  
  e006b5b0
- Update README.md · e0451647
  Haowen Zhang authored Jun 20, 2021
  
  e0451647
- Merge branch 'master' of github.com:haowenz/chromap · 5ef015cd
  Haowen Zhang authored Jun 20, 2021
  
  5ef015cd
- Merge pull request #2 from PeteHaitch/patch-1 · 8593f9cf
  Haowen Zhang authored Jun 20, 2021
  8593f9cf
- Fix typos in README · 8372cb49
  Peter Hickey authored Jun 20, 2021
  
  8372cb49
- Check barcode length and pass it to outputer · a578da90
  Haowen Zhang authored Jun 19, 2021
  
  a578da90
- Add CB tag for corrected barcodes in SAM · b75d1205
  Haowen Zhang authored Jun 19, 2021
  
  b75d1205
May 19, 2021
- Update README.md · 2c14e3de
  Li Song authored May 18, 2021
  
  2c14e3de
- Output mapq in BED format. Update readme · c427ed87
  Li authored May 18, 2021
  
  c427ed87

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Commits · 860b704438aa17feb010d61396c9c4fad6e17455