Commits · 1da16b1726e9be5a1fe1e30a340b52f6dd26ccd1 · github_fork / Chromap

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Feb 21, 2022
- Use a local variable to save mappings. · 1da16b17
  Haowen Zhang authored Feb 19, 2022
  
  1da16b17
- Make mapping_writer a local variable. · 1519d2a3
  Haowen Zhang authored Feb 19, 2022
  1519d2a3
- Move VerifyCandidate* functions to MappingGenerator. · 3ecd8904
  Haowen Zhang authored Feb 19, 2022
  3ecd8904
- Move Tn5 shift function to MappingProcessor. · 1dc57ab4
  Haowen Zhang authored Feb 19, 2022
  
  1dc57ab4
Feb 19, 2022
- Add missing variable in openmp clause. · cbdc8f8e
  Haowen Zhang authored Feb 18, 2022
  
  cbdc8f8e
- Add low-mem mode for single-end reads. · 41ea2d05
  Haowen Zhang authored Feb 18, 2022
  
  41ea2d05
Feb 18, 2022
- Fix QUAL and cigar memory allocation in SAM. · 748236de
  Haowen Zhang authored Feb 17, 2022
  748236de
- Add generator back as a parameter. · 570947e7
  Haowen Zhang authored Feb 17, 2022
  570947e7
- Introduced MappingGenerator. · f3dafda0
  Haowen Zhang authored Feb 16, 2022
  f3dafda0
- Delete default constructor for CandidateProcessor. · 588e405f
  Haowen Zhang authored Feb 15, 2022
  
  588e405f
- Make more alignment related functions free. · b07e478e
  Haowen Zhang authored Feb 15, 2022
  
  b07e478e
- Make alignment related functions free. · ffc9191f
  Haowen Zhang authored Feb 15, 2022
  
  ffc9191f
- Removed unused function declarations. · f246166c
  Haowen Zhang authored Feb 15, 2022
  
  f246166c
- Remove ksort code and clean up chromap header. · f98b91ca
  Haowen Zhang authored Feb 15, 2022
  
  f98b91ca
Feb 17, 2022
- Fix an issue when reversing QUAL. · 21d697e1
  Haowen Zhang authored Feb 16, 2022
  
  21d697e1
- Reverse complementary SEQ and reverse QUAL for SAM. · d68adbef
  Haowen Zhang authored Feb 15, 2022
  
  d68adbef
Feb 16, 2022
- Rename the PostProcessingInLowMem function. · 212bb5cd
  Haowen Zhang authored Feb 15, 2022
  
  212bb5cd
- Clean up code to process mappings in low mem. · c4746b68
  Haowen Zhang authored Feb 15, 2022
  
  c4746b68
Feb 14, 2022
- Update version. · a75753ec
  Haowen Zhang authored Feb 14, 2022
  
  View commits for tag v0.1.6 v0.1.6
  
  a75753ec
- Introduce MappingProcessor. · 455f7af5
  Haowen Zhang authored Feb 14, 2022
  
  455f7af5
- Use reference instead of pointer as func parameters. · 001d2ff2
  Haowen Zhang authored Jan 07, 2022
  
  001d2ff2
Feb 06, 2022
- Use effective range when checking consistency between barcode and barcode whitelist · 55598adf
  Li authored Feb 05, 2022
  
  55598adf
Feb 05, 2022
- Add citation · 2128efe5
  Haowen Zhang authored Feb 04, 2022
  
  2128efe5
Jan 29, 2022
- Update version. · 1868ddf9
  Haowen Zhang authored Jan 28, 2022
  
  1868ddf9
- Fix uninitialized effective lengths for ref. · 87d7e993
  Haowen Zhang authored Jan 27, 2022
  
  87d7e993
Jan 17, 2022
- Update version. · 60088210
  Haowen Zhang authored Jan 17, 2022
  
  View commits for tag v0.1.5 v0.1.5
  
  60088210
Jan 15, 2022
- Compute sequence length using cigar and trim it. · fd4f5d61
  Haowen Zhang authored Jan 14, 2022
  
  fd4f5d61
Jan 09, 2022
- Change the name of OutputTools to MappingWriter. · 072fa11b
  Haowen Zhang authored Jan 06, 2022
  
  072fa11b
- Move reduce pair candidate to candidate processor. · 107b62ee
  Haowen Zhang authored Jan 06, 2022
  
  107b62ee
- Introduce FeatureBarcodeMatrix. · b98c2a2d
  Haowen Zhang authored Jan 06, 2022
  
  b98c2a2d
- Separate headers for mapping and index parameters. · 2dd08a6c
  Haowen Zhang authored Jan 04, 2022
  
  2dd08a6c
- Make static functions free. · 32ae269d
  Haowen Zhang authored Jan 04, 2022
  
  32ae269d
Jan 04, 2022
- Add test on macOS. · b2952bf0
  Haowen Zhang authored Jan 03, 2022
  
  b2952bf0
Dec 30, 2021
- Add missing shared variables in omp region. · 6a8adbfc
  Haowen Zhang authored Dec 29, 2021
  6a8adbfc
Dec 27, 2021
- Remove unused parameters for index construction. · 266c513a
  Haowen Zhang authored Dec 26, 2021
  
  266c513a
- Introduce CandidateProcessor. · ae75498b
  Haowen Zhang authored Dec 26, 2021
  ae75498b
- Refactor the code of Index. · d4ecc759
  Haowen Zhang authored Dec 24, 2021
  d4ecc759
- Separate header for Candidate. · 7b69c877
  Haowen Zhang authored Dec 24, 2021
  
  7b69c877
- Separate single and paired end mapping metadata. · 8ebe012e
  Haowen Zhang authored Dec 22, 2021
  
  8ebe012e
- Move out feature matrix funcs in OutputTools. · 267c10c2
  Haowen Zhang authored Dec 22, 2021
  267c10c2

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Commits · 1da16b1726e9be5a1fe1e30a340b52f6dd26ccd1