Fix alignment issue at the end of seq (e87c4cc8) · Commits · github_fork / Chromap

src/chromap.cc

+1 −1

Original line number	Diff line number	Diff line
		@@ -1500,7 +1500,7 @@ int Chromap<MappingRecord>::BandedAlignPatternToText(const char *pattern, const
		for (int i = 0; i < 2 * error_threshold_; i++) {
		num_errors_at_band_start_position = num_errors_at_band_start_position + ((VP >> i) & (uint32_t) 1);
		num_errors_at_band_start_position = num_errors_at_band_start_position - ((VN >> i) & (uint32_t) 1);
		if (num_errors_at_band_start_position < min_num_errors) {
		if (num_errors_at_band_start_position < min_num_errors \|\| (num_errors_at_band_start_position == min_num_errors && i + 1 == error_threshold_)) {
		min_num_errors = num_errors_at_band_start_position;
		*mapping_end_position = band_start_position + 1 + i;
		}