Commit e47e3a1f authored by Haowen Zhang's avatar Haowen Zhang
Browse files

Remove openmp default clause for compatibility.

parent 6a39b40a
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+2 −2
Original line number Original line Diff line number Diff line
@@ -734,7 +734,7 @@ void Chromap<MappingRecord>::MapPairedEndReads() {
      }
      }
    }
    }


#pragma omp parallel default(none) shared(num_reads_, num_reference_sequences, reference, index, read_batch1, read_batch2, barcode_batch, read_batch1_for_loading, read_batch2_for_loading, barcode_batch_for_loading, candidate_processor, mapping_processor, mapping_generator, mapping_writer, std::cerr, num_loaded_pairs_for_loading, num_loaded_pairs, mappings_on_diff_ref_seqs_for_diff_threads, mappings_on_diff_ref_seqs_for_diff_threads_for_saving, mappings_on_diff_ref_seqs, num_mappings_in_mem, max_num_mappings_in_mem, temp_mapping_file_handles, mm_to_candidates_cache, mm_history1, mm_history2) num_threads(mapping_parameters_.num_threads) reduction(+:num_candidates_, num_mappings_, num_mapped_reads_, num_uniquely_mapped_reads_, num_barcode_in_whitelist_, num_corrected_barcode_)
#pragma omp parallel shared(num_reads_, num_reference_sequences, reference, index, read_batch1, read_batch2, barcode_batch, read_batch1_for_loading, read_batch2_for_loading, barcode_batch_for_loading, candidate_processor, mapping_processor, mapping_generator, mapping_writer, std::cerr, num_loaded_pairs_for_loading, num_loaded_pairs, mappings_on_diff_ref_seqs_for_diff_threads, mappings_on_diff_ref_seqs_for_diff_threads_for_saving, mappings_on_diff_ref_seqs, num_mappings_in_mem, max_num_mappings_in_mem, temp_mapping_file_handles, mm_to_candidates_cache, mm_history1, mm_history2) num_threads(mapping_parameters_.num_threads) reduction(+:num_candidates_, num_mappings_, num_mapped_reads_, num_uniquely_mapped_reads_, num_barcode_in_whitelist_, num_corrected_barcode_)
    {
    {
      thread_num_candidates = 0;
      thread_num_candidates = 0;
      thread_num_mappings = 0;
      thread_num_mappings = 0;
@@ -1285,7 +1285,7 @@ void Chromap<MappingRecord>::MapSingleEndReads() {
            mapping_parameters_.num_threads / num_reference_sequences);
            mapping_parameters_.num_threads / num_reference_sequences);
      }
      }
    }
    }
#pragma omp parallel default(none) shared(num_reads_, mm_history, reference, index, read_batch, barcode_batch, read_batch_for_loading, barcode_batch_for_loading, std::cerr, num_loaded_reads_for_loading, num_loaded_reads, num_reference_sequences, mappings_on_diff_ref_seqs_for_diff_threads, mappings_on_diff_ref_seqs_for_diff_threads_for_saving, mappings_on_diff_ref_seqs, temp_mapping_file_handles, mm_to_candidates_cache, mapping_writer, candidate_processor, mapping_processor, mapping_generator, num_mappings_in_mem, max_num_mappings_in_mem) num_threads(mapping_parameters_.num_threads) reduction(+:num_candidates_, num_mappings_, num_mapped_reads_, num_uniquely_mapped_reads_, num_barcode_in_whitelist_, num_corrected_barcode_)
#pragma omp parallel shared(num_reads_, mm_history, reference, index, read_batch, barcode_batch, read_batch_for_loading, barcode_batch_for_loading, std::cerr, num_loaded_reads_for_loading, num_loaded_reads, num_reference_sequences, mappings_on_diff_ref_seqs_for_diff_threads, mappings_on_diff_ref_seqs_for_diff_threads_for_saving, mappings_on_diff_ref_seqs, temp_mapping_file_handles, mm_to_candidates_cache, mapping_writer, candidate_processor, mapping_processor, mapping_generator, num_mappings_in_mem, max_num_mappings_in_mem) num_threads(mapping_parameters_.num_threads) reduction(+:num_candidates_, num_mappings_, num_mapped_reads_, num_uniquely_mapped_reads_, num_barcode_in_whitelist_, num_corrected_barcode_)
    {
    {
      thread_num_candidates = 0;
      thread_num_candidates = 0;
      thread_num_mappings = 0;
      thread_num_mappings = 0;