Do not supplement if too many best mates. (d37ad5da) · Commits · github_fork / Chromap

src/index.cc

+2 −2

Original line number	Diff line number	Diff line
		@@ -492,8 +492,8 @@ void Index::GenerateCandidatesFromRepetitiveReadWithMateInfo(int error_threshold
		++best_candidate_num;
		}
		}
		//if (best_candidate_num != 1 \|\| max_count < min_num_seeds_required_for_mapping_)
		// return;
		if (best_candidate_num > 500)//\|\| max_count < min_num_seeds_required_for_mapping_)
		return;
		std::vector<std::pair<uint64_t, uint64_t> > boundaries ;
		for (uint32_t ci = 0; ci < mate_candidates_size; ++ci){
		if (mate_candidates->at(ci).count == max_count) {