Commit cbdc8f8e authored by Haowen Zhang's avatar Haowen Zhang Committed by Li Song
Browse files

Add missing variable in openmp clause.

parent 41ea2d05
Loading
Loading
Loading
Loading
+1 −1
Original line number Diff line number Diff line
@@ -1551,7 +1551,7 @@ void Chromap<MappingRecord>::MapSingleEndReads() {
            num_threads_ / num_reference_sequences);
      }
    }
#pragma omp parallel default(none) shared(barcode_whitelist_file_path_, output_mappings_not_in_whitelist_, window_size_, custom_rid_order_path_, error_threshold_, max_num_best_mappings_, max_seed_frequencies_, num_threads_, num_reads_, mm_history, reference, index, read_batch, barcode_batch, read_batch_for_loading, barcode_batch_for_loading, std::cerr, num_loaded_reads_for_loading, num_loaded_reads, num_reference_sequences, mappings_on_diff_ref_seqs_for_diff_threads, mappings_on_diff_ref_seqs_for_diff_threads_for_saving, mm_to_candidates_cache, mapping_writer_, candidate_processor, mapping_processor, mapping_generator, num_mappings_in_mem, max_num_mappings_in_mem) num_threads(num_threads_) reduction(+:num_candidates_, num_mappings_, num_mapped_reads_, num_uniquely_mapped_reads_, num_barcode_in_whitelist_, num_corrected_barcode_)
#pragma omp parallel default(none) shared(barcode_whitelist_file_path_, output_mappings_not_in_whitelist_, window_size_, custom_rid_order_path_, error_threshold_, max_num_best_mappings_, max_seed_frequencies_, num_threads_, num_reads_, mm_history, reference, index, read_batch, barcode_batch, read_batch_for_loading, barcode_batch_for_loading, std::cerr, num_loaded_reads_for_loading, num_loaded_reads, num_reference_sequences, mappings_on_diff_ref_seqs_for_diff_threads, mappings_on_diff_ref_seqs_for_diff_threads_for_saving, mm_to_candidates_cache, mapping_writer_, candidate_processor, mapping_processor, mapping_generator, low_memory_mode_, num_mappings_in_mem, max_num_mappings_in_mem) num_threads(num_threads_) reduction(+:num_candidates_, num_mappings_, num_mapped_reads_, num_uniquely_mapped_reads_, num_barcode_in_whitelist_, num_corrected_barcode_)
    {
      thread_num_candidates = 0;
      thread_num_mappings = 0;