Use local directory to hold tempoary files when the output file is to stdout or stderr (c1fff8bc) · Commits · github_fork / Chromap

src/mapping_writer.h

+6 −0

Original line number	Diff line number	Diff line
		@@ -381,6 +381,12 @@ void MappingWriter<MappingRecord>::OutputTempMappings(
		temp_mapping_file_handle.file_path =
		mapping_parameters_.mapping_output_file_path + ".temp" +
		std::to_string(temp_mapping_file_handles.size());
		if (mapping_parameters_.mapping_output_file_path == "/dev/stdout"
		\|\| mapping_parameters_.mapping_output_file_path == "/dev/stderr")
		{
		temp_mapping_file_handle.file_path = "chromap_output.temp" +
		std::to_string(temp_mapping_file_handles.size());
		}
		temp_mapping_file_handles.emplace_back(temp_mapping_file_handle);

		OutputTempMapping(temp_mapping_file_handle.file_path, num_reference_sequences,