Commit ab48f22d authored by Haowen Zhang's avatar Haowen Zhang
Browse files

Limit the supplement of best candidates

parent 93a80914

src/index.cc

+2 −1
Original line number Diff line number Diff line
@@ -493,7 +493,8 @@ void Index::GenerateCandidatesFromRepetitiveReadWithMateInfo(int error_threshold 
    }

  }

  //if (best_candidate_num != 1 || max_count < min_num_seeds_required_for_mapping_) 

  //  return;

  if (best_candidate_num >= 500) 

    return;



  for (uint32_t ci = 0; ci < mate_candidates_size; ++ci) {

    if (mate_candidates->at(ci).count != max_count) {

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