Rename funcs and variables for draft mappings. (9d474b4f) · Commits · github_fork / Chromap

src/chromap.h

+9 −7

Original line number	Diff line number	Diff line
		@@ -371,8 +371,9 @@ void Chromap::MapSingleEndReads() {
		mapping_generator.VerifyCandidates(read_batch, read_index,
		reference, mapping_metadata);

		size_t current_num_mappings = mapping_metadata.GetNumMappings();
		if (current_num_mappings > 0) {
		const size_t current_num_draft_mappings =
		mapping_metadata.GetNumDraftMappings();
		if (current_num_draft_mappings > 0) {
		std::vector<std::vector<MappingRecord>>
		&mappings_on_diff_ref_seqs =
		mappings_on_diff_ref_seqs_for_diff_threads
		@@ -847,19 +848,20 @@ void Chromap::MapPairedEndReads() {
		read_batch1, pair_index, reference,
		paired_end_mapping_metadata.mapping_metadata1_);

		size_t current_num_mappings1 =
		const size_t current_num_draft_mappings1 =
		paired_end_mapping_metadata.mapping_metadata1_
		.GetNumMappings();
		.GetNumDraftMappings();

		mapping_generator.VerifyCandidates(
		read_batch2, pair_index, reference,
		paired_end_mapping_metadata.mapping_metadata2_);

		size_t current_num_mappings2 =
		const size_t current_num_draft_mappings2 =
		paired_end_mapping_metadata.mapping_metadata2_
		.GetNumMappings();
		.GetNumDraftMappings();

		if (current_num_mappings1 > 0 && current_num_mappings2 > 0) {
		if (current_num_draft_mappings1 > 0 &&
		current_num_draft_mappings2 > 0) {
		std::vector<std::vector<MappingRecord>>
		&mappings_on_diff_ref_seqs =
		mappings_on_diff_ref_seqs_for_diff_threads

+1 −1

Original line number	Diff line number	Diff line
		@@ -38,7 +38,7 @@ class MappingMetadata {
		return positive_candidates_.size() + negative_candidates_.size();
		}

		inline size_t GetNumMappings() const {
		inline size_t GetNumDraftMappings() const {
		return positive_mappings_.size() + negative_mappings_.size();
		}