Change the omp statement order with cache update. (9a2e3f17) · Commits · github_fork / Chromap

src/chromap.cc

+2 −2

Original line number	Diff line number	Diff line
		@@ -1821,6 +1821,7 @@ void Chromap<MappingRecord>::MapPairedEndReads() {
		// }
		//}
		// Update cache
		#pragma omp taskwait
		for (uint32_t pair_index = 0; pair_index < num_loaded_pairs;
		++pair_index) {
		if (num_reads_ > 5000000 &&
		@@ -1857,7 +1858,6 @@ void Chromap<MappingRecord>::MapPairedEndReads() {
		mm_history2[pair_index].negative_candidates);
		}
		}
		#pragma omp taskwait
		std::cerr << "Mapped " << num_loaded_pairs << " read pairs in "
		<< Chromap<>::GetRealTime() - real_batch_start_time
		<< "s.\n";
		@@ -3005,6 +3005,7 @@ void Chromap<MappingRecord>::MapSingleEndReads() {
		}
		}
		}
		#pragma omp taskwait
		for (uint32_t read_index = 0; read_index < num_loaded_reads;
		++read_index) {
		if (num_reads_ > 2500000 &&
		@@ -3030,7 +3031,6 @@ void Chromap<MappingRecord>::MapSingleEndReads() {
		}
		// std::cerr<<"cache memusage: " <<
		// mm_to_candidates_cache.GetMemoryBytes() <<"\n" ;
		#pragma omp taskwait
		num_loaded_reads = num_loaded_reads_for_loading;
		read_batch_for_loading.SwapSequenceBatch(read_batch);
		barcode_batch_for_loading.SwapSequenceBatch(barcode_batch);