Commit 83c4ca3d authored by Haowen Zhang's avatar Haowen Zhang
Browse files

Only template mapping functions.

parent 2942102a

src/chromap.cc

+43 −1022

File changed.

Preview size limit exceeded, changes collapsed.

src/chromap.h

+953 −1

File changed.

Preview size limit exceeded, changes collapsed.

src/index.cc

+0 −1
Original line number Original line Diff line number Diff line
@@ -5,7 +5,6 @@ 
#include <algorithm>

#include <algorithm>

#include <iostream>

#include <iostream>





#include "chromap.h"

#include "utils.h"

#include "utils.h"





namespace chromap {

namespace chromap {

src/mapping_metadata.h

+0 −2
Original line number Original line Diff line number Diff line
@@ -15,7 +15,6 @@ class CandidateProcessor; 
class PairedEndMappingMetadata;

class PairedEndMappingMetadata;

template <typename MappingRecord>

template <typename MappingRecord>

class MappingGenerator;

class MappingGenerator;

template <typename MappingRecord>

class Chromap;

class Chromap;





class MappingMetadata {

class MappingMetadata {
@@ -135,7 +134,6 @@ class MappingMetadata { 
  friend class PairedEndMappingMetadata;

  friend class PairedEndMappingMetadata;

  template <typename MappingRecord>

  template <typename MappingRecord>

  friend class MappingGenerator;

  friend class MappingGenerator;

  template <typename MappingRecord>

  friend class Chromap;

  friend class Chromap;

};

};

src/paired_end_mapping_metadata.h

+0 −1
Original line number Original line Diff line number Diff line
@@ -88,7 +88,6 @@ class PairedEndMappingMetadata { 
  friend class CandidateProcessor;

  friend class CandidateProcessor;

  template <typename MappingRecord>

  template <typename MappingRecord>

  friend class MappingGenerator;

  friend class MappingGenerator;

  template <typename MappingRecord>

  friend class Chromap;

  friend class Chromap;

};

};

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