Commit 47d213ed authored by Haowen Zhang's avatar Haowen Zhang
Browse files

Pass the right parameters for index construction.

parent 86cbef33

chromap.1

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.TH chromap 1 "22 Feb 2022" "chromap-0.2 (r351)" "Bioinformatics tools"

.TH chromap 1 "22 Feb 2022" "chromap-0.2 (r352)" "Bioinformatics tools"

.SH NAME

.PP

chromap - fast alignment and preprocessing of chromatin profiles

src/chromap.cc

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@@ -18,7 +18,7 @@ void Chromap::ConstructIndex() { 
  // TODO(Haowen): Need a faster algorithm

  // Load all sequences in the reference into one batch

  SequenceBatch reference;

  reference.InitializeLoading(mapping_parameters_.reference_file_path);

  reference.InitializeLoading(index_parameters_.reference_file_path);

  uint32_t num_sequences = reference.LoadAllSequences();

  Index index(index_parameters_.kmer_size, index_parameters_.window_size,

              index_parameters_.num_threads,

src/chromap.h

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@@ -26,7 +26,7 @@ 
#include "temp_mapping.h"

#include "utils.h"



#define CHROMAP_VERSION "0.2-r351"

#define CHROMAP_VERSION "0.2-r352"



namespace chromap {

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