Change the cache size to a prime number (2dd1b2db) · Commits · github_fork / Chromap

src/chromap.cc

+2 −2

Original line number	Diff line number	Diff line
		@@ -319,7 +319,7 @@ void Chromap<MappingRecord>::MapPairedEndReads() {
		SequenceBatch read_batch1_for_loading(read_batch_size_);
		SequenceBatch read_batch2_for_loading(read_batch_size_);
		SequenceBatch barcode_batch_for_loading(read_batch_size_);
		mm_cache mm_to_candidates_cache(1000000) ;
		mm_cache mm_to_candidates_cache(1000003) ;
		mm_to_candidates_cache.SetKmerLength(kmer_size_) ;
		struct _mm_history *mm_history1 = new struct _mm_history[read_batch_size_];
		struct _mm_history *mm_history2 = new struct _mm_history[read_batch_size_];
		@@ -917,7 +917,7 @@ void Chromap<MappingRecord>::MapSingleEndReads() {
		SequenceBatch read_batch_for_loading(read_batch_size_);
		SequenceBatch barcode_batch(read_batch_size_);
		SequenceBatch barcode_batch_for_loading(read_batch_size_);
		mm_cache mm_to_candidates_cache(1000000) ;
		mm_cache mm_to_candidates_cache(1000003) ;
		mm_to_candidates_cache.SetKmerLength(kmer_size_) ;
		struct _mm_history *mm_history = new struct _mm_history[read_batch_size_];
		read_batch_for_loading.InitializeLoading(read_file1_path_);