Use a char for range strand. (28c58f79) · Commits · github_fork / Chromap

src/sequence_effective_range.h

+7 −6

Original line number	Diff line number	Diff line
		@@ -20,7 +20,7 @@ class SequenceEffectiveRange {
		void Init() {
		starts.push_back(0);
		ends.push_back(-1);
		strand = 1;
		strand = '+';
		default_range = true;
		}

		@@ -34,7 +34,7 @@ class SequenceEffectiveRange {
		if (default_range) {
		starts.clear();
		ends.clear();
		strand = 1;
		strand = '+';
		default_range = false;
		}

		@@ -46,7 +46,7 @@ class SequenceEffectiveRange {
		} else if (j == 1) {
		ends.push_back(atoi(buffer));
		} else {
		strand = buffer[0] == '+' ? 1 : -1;
		strand = buffer[0];
		}

		blen = 0;
		@@ -77,7 +77,7 @@ class SequenceEffectiveRange {

		// Check whether the effective range is the full range
		bool IsFullRange() {
		if (strand == 1 && starts[0] == 0 && ends[0] == -1) {
		if (strand == '+' && starts[0] == 0 && ends[0] == -1) {
		return true;
		}

		@@ -110,7 +110,7 @@ class SequenceEffectiveRange {
		s[i] = '\0';
		len = i;

		if (strand == -1) {
		if (strand == '-') {
		if (need_complement) {
		for (i = 0; i < len; ++i) {
		s[i] = Uint8ToChar(((uint8_t)3) ^ (CharToUint8(s[i])));
		@@ -129,7 +129,8 @@ class SequenceEffectiveRange {
		private:
		std::vector<int> starts;
		std::vector<int> ends;
		int strand;
		// The barcode will be reverse-complemented after extraction if strand is '-'.
		char strand;
		// Whether the range has been modified by new input.
		bool default_range;
		};