Rename the PostProcessingInLowMem function. (212bb5cd) · Commits · github_fork / Chromap

src/chromap.cc

+4 −3

Original line number	Diff line number	Diff line
		@@ -530,7 +530,7 @@ size_t Chromap<MappingRecord>::FindBestMappingIndexFromDuplicates(
		}

		template <typename MappingRecord>
		void Chromap<MappingRecord>::PostProcessingInLowMemory(
		void Chromap<MappingRecord>::ProcessAndOutputMappingsInLowMemory(
		uint32_t num_mappings_in_mem, uint32_t num_reference_sequences,
		const SequenceBatch &reference,
		const MappingProcessor<MappingRecord> &mapping_processor) {
		@@ -1276,8 +1276,9 @@ void Chromap<MappingRecord>::MapPairedEndReads() {
		index.Destroy();

		if (low_memory_mode_) {
		PostProcessingInLowMemory(num_mappings_in_mem, num_reference_sequences,
		reference, mapping_processor);
		ProcessAndOutputMappingsInLowMemory(num_mappings_in_mem,
		num_reference_sequences, reference,
		mapping_processor);
		} else {
		// OutputMappingStatistics(num_reference_sequences,
		// mappings_on_diff_ref_seqs_, mappings_on_diff_ref_seqs_);

+2 −1

Original line number	Diff line number	Diff line
		@@ -316,10 +316,11 @@ class Chromap {
		size_t FindBestMappingIndexFromDuplicates(
		const std::vector<MappingRecord> &duplicates);

		void PostProcessingInLowMemory(
		void ProcessAndOutputMappingsInLowMemory(
		uint32_t num_mappings_in_mem, uint32_t num_reference_sequences,
		const SequenceBatch &reference,
		const MappingProcessor<MappingRecord> &mapping_processor);

		void VerifyCandidatesOnOneDirectionUsingSIMD(
		Direction candidate_direction, const SequenceBatch &read_batch,
		uint32_t read_index, const SequenceBatch &reference,