Unverified Commit 2128efe5 authored by Haowen Zhang's avatar Haowen Zhang Committed by GitHub
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Add citation

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@@ -29,6 +29,7 @@ cd chromap && make
    - [Map ATAC-seq/scATAC-seq short reads](#map-atac)
    - [Map Hi-C short reads](#map-hic)
  - [Getting help](#help)
  - [Citing Chromap](#cite)

## <a name="uguide"></a>User Guide

@@ -196,6 +197,12 @@ can be displayed by running Chromap with **-h** or be found at the
[manpage][manpage]. If you encounter bugs or have further questions or 
requests, you can raise an issue at the [issue page][issue].

### <a name="cite"></a>Citing Chromap

If you use Chromap, please cite:

> Zhang, H., Song, L., Wang, X., Cheng, H., Wang, C., Meyer, C. A., ... & Li, H. (2021). Fast alignment and preprocessing of chromatin profiles with Chromap. Nature communications, 12(1), 1-6.
> https://doi.org/10.1038/s41467-021-26865-w

[bed]: https://genome.ucsc.edu/FAQ/FAQformat.html#format1
[paf]: https://github.com/lh3/miniasm/blob/master/PAF.md