Clean up some code. (16b0cc6f) · Commits · github_fork / Chromap

src/chromap.cc

+3 −6

Original line number	Diff line number	Diff line
		@@ -388,7 +388,7 @@ uint32_t Chromap<MappingRecord>::SampleInputBarcodesAndExamineLength() {
		uint32_t cell_barcode_length = barcode_batch.GetSequenceLengthAt(0);
		for (uint32_t i = 1; i < num_loaded_barcodes; ++i) {
		if (barcode_batch.GetSequenceLengthAt(i) != cell_barcode_length) {
		ExitWithMessage("ERROR: Barcode lengths are not equal in the sample!");
		ExitWithMessage("ERROR: barcode lengths are not equal in the sample!");
		}
		}

		@@ -564,8 +564,7 @@ void Chromap<MappingRecord>::GenerateCustomizedRidRank(
		}

		if (k > ref_size) {
		chromap::ExitWithMessage(
		"Unknown chromsome names found in chromosome order file");
		ExitWithMessage("Unknown chromsome names found in chromosome order file");
		}

		/*for (i = 0 ; i < ref_size; ++i) {
		@@ -576,9 +575,7 @@ void Chromap<MappingRecord>::GenerateCustomizedRidRank(
		template <typename MappingRecord>
		void Chromap<MappingRecord>::RerankCandidatesRid(
		std::vector<Candidate> &candidates) {
		int i;
		int size = candidates.size();
		for (i = 0; i < size; ++i) {
		for (size_t i = 0; i < candidates.size(); ++i) {
		uint64_t rid = (uint32_t)(candidates[i].position >> 32);
		rid = custom_rid_rank_[rid];
		candidates[i].position =