Do not trigger repetitive second round if there are too few minimizers to start with (05a446c7) · Commits · github_fork / Chromap

src/index.cc

+1 −1

Original line number	Diff line number	Diff line
		@@ -613,7 +613,7 @@ void Index::GenerateCandidates(int error_threshold, const std::vector<std::pair<
		*repetitive_seed_length = 0;
		bool recollect = true;
		int repetitive_seed_count = CollectCandidates(max_seed_frequencies_[0], minimizers, repetitive_seed_length, positive_hits, negative_hits, false);
		if (repetitive_seed_count > (int)minimizers.size() / 2) {
		if (repetitive_seed_count > (int)minimizers.size() / 2 && minimizers.size() >= 10) {
		positive_hits->clear();
		negative_hits->clear();
		*repetitive_seed_length = 0;