Loading reprocess_deposited_data.md +5 −5 Original line number Diff line number Diff line Loading @@ -4,10 +4,10 @@ The SHARE-seqV2 alignment pipeline generates a pair of fastqs for each sample. T We have deposited SHARE-seqV2 data on [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207308) As an example, we can download the species mixing ATAC SRA record by fasterq-dump -A SRR19912835 --split-files -p This will generate two fastq files: SRR19912835_1.fastq and SRR19912835_2.fastq The read header looks like: The read header looks like:\ head -4 SRR19912835_1.fastq\ @SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50 GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAAACAAAACAAAA +SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF: @SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50\ GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAAACAAAACAAAA\ +SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50\ FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:\ Loading
reprocess_deposited_data.md +5 −5 Original line number Diff line number Diff line Loading @@ -4,10 +4,10 @@ The SHARE-seqV2 alignment pipeline generates a pair of fastqs for each sample. T We have deposited SHARE-seqV2 data on [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207308) As an example, we can download the species mixing ATAC SRA record by fasterq-dump -A SRR19912835 --split-files -p This will generate two fastq files: SRR19912835_1.fastq and SRR19912835_2.fastq The read header looks like: The read header looks like:\ head -4 SRR19912835_1.fastq\ @SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50 GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAAACAAAACAAAA +SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF: @SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50\ GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAAACAAAACAAAA\ +SRR19912835.1 A01389:111:H2Y5KDMXY:1:1101:1127:1000_R1.003,R2.032,R3.081,P1.06 length=50\ FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:\
