# A tutorial for reprocess the share-seqV2 data deposited on GEO
Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2.\
The V2 pipeline is much faster than previous version and less demanding. \
Note: The fastq and output files are reformated and different from V1 pipeline.\
**Author: Sai Ma. masai.zju@gmail.com**
# A tutorial for reprocessing data deposited on GEO
The SHARE-seqV2 alignment pipeline generates a pair of fastqs for each sample. These samples are ready to be submitted to GEO. Once the the fastqs are processed by GEO and they will be converted to SRA file with modified read header. This turorial demonstrates how to download deposited data and run the share-seqV2 pipeline.\
We have deposited SHARE-seqV2 data on GEO [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207308]\
