Loading reprocess_deposited_data.md +3 −1 Original line number Diff line number Diff line Loading @@ -13,6 +13,8 @@ GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAAACAAAACAAAA\ FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF: Run these lines to modify the header and convert the format to be compatable with SHARE-seq pipeline. \ cat SRR19912835_1.fastq | awk '{if(NR%4==1) print "@"$2; else if(NR%4==2) print; else if(NR%4==3) print "+"; else if(NR%4==3) print $0}' | bgzip > speciesmix.ATAC.R1.fastq.gz cat SRR19912835_1.fastq | awk '{if(NR%4==1) print "@"$2; else if(NR%4==2) print; else if(NR%4==3) print "+"; else if(NR%4==3) print $0}' | bgzip > speciesmix.ATAC.R1.fastq.gz\ cat SRR19912835_2.fastq | awk '{if(NR%4==1) print "@"$2; else if(NR%4==2) print; else if(NR%4==3) print "+"; else if(NR%4==3) print $0}' | bgzip > speciesmix.ATAC.R2.fastq.gz Move the resulting fastq.gz files into a new directoy. Modify the Loading
reprocess_deposited_data.md +3 −1 Original line number Diff line number Diff line Loading @@ -13,6 +13,8 @@ GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAAACAAAACAAAA\ FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF: Run these lines to modify the header and convert the format to be compatable with SHARE-seq pipeline. \ cat SRR19912835_1.fastq | awk '{if(NR%4==1) print "@"$2; else if(NR%4==2) print; else if(NR%4==3) print "+"; else if(NR%4==3) print $0}' | bgzip > speciesmix.ATAC.R1.fastq.gz cat SRR19912835_1.fastq | awk '{if(NR%4==1) print "@"$2; else if(NR%4==2) print; else if(NR%4==3) print "+"; else if(NR%4==3) print $0}' | bgzip > speciesmix.ATAC.R1.fastq.gz\ cat SRR19912835_2.fastq | awk '{if(NR%4==1) print "@"$2; else if(NR%4==2) print; else if(NR%4==3) print "+"; else if(NR%4==3) print $0}' | bgzip > speciesmix.ATAC.R2.fastq.gz Move the resulting fastq.gz files into a new directoy. Modify the
