Unverified Commit f1672454 authored by stephen scott tucker's avatar stephen scott tucker Committed by GitHub
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Fixed hmrR_GLM docs to reflect removal of T from params

parent 83bc8041
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+9 −10
Original line number Diff line number Diff line
@@ -33,13 +33,13 @@
% idxBasis - this specifies the type of basis function to use for the HRF
%            1. a consecutive sequence of gaussian functions
%            2. a modified gamma function convolved with a square-wave of
%                duration T. Set T=0 for no convolution.
%                duration given by the stim marker.
%                The modified gamma function is
%                (exp(1)*(t-tau).^2/sigma^2) .* exp(-(tHRF-tau).^2/sigma^2)
%            3. a modified gamma function and its derivative convolved
%                with a square-wave of duration T. Set T=0 for no convolution.
%                with a square-wave of duration given by the stim marker.
%			 4.  GAM function from 3dDeconvolve AFNI convolved with
%                a square-wave of duration T. Set T=0 for no convolution.
%                a square-wave of duration given by the stim marker.
% 			         (t/(p*q))^p * exp(p-t/q)
%                Defaults: p=8.6 q=0.547
%                The peak is at time p*q.  The FWHM is about 2.3*sqrt(p)*q.
@@ -47,15 +47,14 @@
%               idxBasis=1 [stdev step ~ ~ ~ ~] where stdev is the width of the
%                  gaussian and step is the temporal spacing between
%                  consecutive gaussians
%               idxBasis=2. [tau sigma T] applied to both HbO and HbR
%                  or [tau1 sigma1 T1 tau2 sigma2 T2]
%               idxBasis=2. [tau sigma] applied to both HbO and HbR
%                  or [tau1 sigma1 tau2 sigma2]
%                  where the 1 (2) indicates the parameters for HbO (HbR).
%                  default: 0.1 3.0 10.0 1.8 3.0 10.0
%               idxBasis=3 [tau sigma T] applied to both HbO and HbR
%                  or [tau1 sigma1 T1 tau2 sigma2 T2]
%               idxBasis=3 [tau sigma] applied to both HbO and HbR
%                  or [tau1 sigma1 tau2 sigma2]
%                  where the 1 (2) indicates the parameters for HbO (HbR).
%               idxBasis=4 [p q T] applied to both HbO and HbR
%                  or [p1 q1 T1 p2 q2 T2]
%               idxBasis=4 [p q] applied to both HbO and HbR
%                  or [p1 q1 p2 q2]
%                  where the 1 (2) indicates the parameters for HbO (HbR).
% rhoSD_ssThresh - max distance for a short separation measurement. Set =0
%          if you do not want to regress the short separation measurements.