v1.29.3 (d80dc2c0) · Commits · github_fork / Homer3

DataTree/AcquiredData/Snirf/AuxClass.m

+17 −1

Original line number	Diff line number	Diff line
		@@ -7,6 +7,11 @@ classdef AuxClass < FileLoadSaveClass
		timeOffset
		end

		% Properties not part of the SNIRF spec. These parameters aren't loaded or saved to files
		properties (Access = private)
		debuglevel
		end

		methods

		% -------------------------------------------------------
		@@ -14,6 +19,8 @@ classdef AuxClass < FileLoadSaveClass
		% Set class properties not part of the SNIRF format
		obj.SetFileFormat('hdf5');

		obj.debuglevel = DebugLevel('none');

		obj.timeOffset = 0;
		if nargin==1
		if isa(varargin{1}, 'AuxClass')
		@@ -113,6 +120,10 @@ classdef AuxClass < FileLoadSaveClass
		H5F.close(fid);
		end

		if obj.debuglevel.Get() == obj.debuglevel.SimulateBadData()
		obj.SimulateBadData();
		end

		hdf5write_safe(fileobj, [location, '/name'], obj.name);
		hdf5write_safe(fileobj, [location, '/dataTimeSeries'], obj.dataTimeSeries);
		hdf5write_safe(fileobj, [location, '/time'], obj.time);
		@@ -236,6 +247,11 @@ classdef AuxClass < FileLoadSaveClass
		end


		% ----------------------------------------------------------------------------------
		function SimulateBadData(obj)
		obj.dataTimeSeries(end,:) = [];
		end

		end

		end

DataTree/AcquiredData/Snirf/SnirfClass.m

+10 −4

Original line number	Diff line number	Diff line
		@@ -261,9 +261,9 @@ classdef SnirfClass < AcqDataClass & FileLoadSaveClass
		'''formatVersion'' is invalid.'
		'''metaDataTags'' is invalid.'
		'''data'' is invalid.'
		'''stim'' is invalid.'
		'''stim'' is invalid and could not be loaded'
		'''probe'' is invalid.'
		'''aux'' is invalid.'
		'''aux'' is invalid and could not be loaded'
		};
		end

		@@ -538,7 +538,10 @@ classdef SnirfClass < AcqDataClass & FileLoadSaveClass

		%%%% Load stim
		if obj.LoadStim(obj.fid) < 0 && err == 0
		err = -5;
		% Optional field: even if invalid we still want to be
		% able to work with the rest of the data. Only log
		% warning
		err = 5;
		end

		%%%% Load probe
		@@ -548,7 +551,10 @@ classdef SnirfClass < AcqDataClass & FileLoadSaveClass

		%%%% Load aux. This is an optional field
		if obj.LoadAux(obj.fid) < 0 && err == 0
		err = -7;
		% Optional field: even if invalid we still want to be
		% able to work with the rest of the data. Only log
		% warning
		err = 7;
		end

		% Close group

DataTree/AcquiredData/Snirf/StimClass.m

+22 −2

Original line number	Diff line number	Diff line
		@@ -10,6 +10,7 @@ classdef StimClass < FileLoadSaveClass
		% Properties not part of the SNIRF spec. These parameters aren't loaded or saved to files
		properties (Access = private)
		errmargin % Margin for interpolating onset times. Not part of SNIRF
		debuglevel
		end

		methods
		@@ -20,6 +21,8 @@ classdef StimClass < FileLoadSaveClass
		obj.SetFileFormat('hdf5');
		obj.errmargin = 1e-2;
		obj.states = [];
		obj.debuglevel = DebugLevel('None');

		if nargin==1
		if isa(varargin{1}, 'StimClass')
		obj.Copy(varargin{1});
		@@ -154,6 +157,10 @@ classdef StimClass < FileLoadSaveClass
		H5F.close(fid);
		end

		if obj.debuglevel.Get() == obj.debuglevel.SimulateBadData()
		obj.SimulateBadData();
		end

		hdf5write_safe(fileobj, [location, '/name'], obj.name);

		% Since this is a writable writeable parameter AFTER it's creation, we
		@@ -236,6 +243,11 @@ classdef StimClass < FileLoadSaveClass
		% ----------------------------------------------------------------------------------
		function err = ErrorCheck(obj)
		err = 0;

		% According to SNIRF spec, stim data is invalid if it has > 0 AND < 3 columns
		if isempty(obj.data)
		return;
		end
		if size(obj.data, 2)<3
		err = -2;
		return;
		@@ -573,6 +585,14 @@ classdef StimClass < FileLoadSaveClass
		nbytes = sizeof(obj.states) + sizeof(obj.name) + sizeof(obj.data) + sizeof(obj.GetFilename()) + sizeof(obj.GetFileFormat()) + sizeof(obj.GetSupportedFormats()) + 8;
		end


		% ----------------------------------------------------------------------------------
		function SimulateBadData(obj)
		onsets = 10:20.2:100;
		obj.data = [onsets(:), zeros(length(onsets),1)];
		end


		end

		end

Utils/DebugLevel.m

0 → 100644

+40 −0

Original line number	Diff line number	Diff line
		classdef DebugLevel
		properties
		possibleValues
		value
		end

		methods

		% ----------------------------------------------------------------------------------
		function obj = DebugLevel(value) %#ok<*INUSD>
		obj.possibleValues = struct('none',0,'simulateBadData',1);
		switch(lower(value))
		case 'none'
		obj.value = obj.possibleValues.none;
		case 'simulatebaddata'
		obj.value = obj.possibleValues.simulateBadData;
		otherwise
		obj.value = obj.possibleValues.none;
		end
		end


		% ----------------------------------------------------------------------------------
		function value = Get(obj)
		value = obj.value;
		end


		% ----------------------------------------------------------------------------------
		function value = SimulateBadData(obj)
		value = obj.possibleValues.simulateBadData;
		end

		% ----------------------------------------------------------------------------------
		function value = None(obj)
		value = obj.possibleValues.None;
		end

		end
		end
		No newline at end of file

Utils/getVernum.m

+1 −1

Original line number	Diff line number	Diff line
		@@ -2,5 +2,5 @@ function vrnnum = getVernum()

		vrnnum{1} = '1'; % Major version #
		vrnnum{2} = '29'; % Major sub-version #
		vrnnum{3} = '2'; % Minor version #
		vrnnum{3} = '3'; % Minor version #
		vrnnum{4} = '0'; % Minor sub-version # or patch #: 'p1', 'p2', etc

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