v1.15.3 (a90dc75d) · Commits · github_fork / Homer3

DataTree/AcquiredData/README.md

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		@@ -27,3 +27,17 @@ At this point you should be ready to start snirf_homer3 from the Matlab command

		Run the demos demo_snirf.m and demo_snirf_readfile.m (which should be available on the Matlab command line after running setpaths). They demonstrate how to use SnirfClass reader/writer to save, load and read SNIRF files. Make sure to run demo_snirf before demo_snirf_readfile.m since it expects the snirf files generated by demo_snirf to be present (otherwise it displays a message box stating this if it doesn't find them). The snirf_homer3 project includes sample .nirs files (DataTree/AcquiredData/Snirf/Examples) which the demo converts to .snirf files and then shows how to load them back into memory.

		3. Example 1:

		% Save .nirs file in SNIRF format
		nirs = load('neuro_run01.nirs','-mat');
		snirf1 = SnirfClass(nirs);
		snirf1.Save('neuro_run01.snirf');
		snirf1.Info();

		% Check that the file was saved correctly by looking at
		% snirf2 contents and comparing with snirf1 contents
		snirf2 = SnirfClass();
		snirf2.Load('neuro_run01.snirf');
		snirf2.Info();

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		@@ -73,6 +73,11 @@ classdef AuxClass < FileLoadSaveClass

		% -------------------------------------------------------
		function SaveHdf5(obj, fname, parent)
		% Arg 1
		if ~exist('fname', 'var') \|\| isempty(fname)
		error('Unable to save file. No file name given.')
		end

		if ~exist(fname, 'file')
		fid = H5F.create(fname, 'H5F_ACC_TRUNC', 'H5P_DEFAULT', 'H5P_DEFAULT');
		H5F.close(fid);

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		@@ -87,6 +87,7 @@ classdef DataClass < FileLoadSaveClass
		% -------------------------------------------------------
		function err = LoadHdf5(obj, fname, parent)
		err = 0;

		if ~exist(fname, 'file')
		err = -1;
		return;
		@@ -126,6 +127,10 @@ classdef DataClass < FileLoadSaveClass

		% -------------------------------------------------------
		function SaveHdf5(obj, fname, parent)
		if ~exist('fname', 'var') \|\| isempty(fname)
		error('Unable to save file. No file name given.')
		end

		if ~exist(fname, 'file')
		fid = H5F.create(fname, 'H5F_ACC_TRUNC', 'H5P_DEFAULT', 'H5P_DEFAULT');
		H5F.close(fid);

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		@@ -129,6 +129,13 @@ classdef MeasListClass < FileLoadSaveClass

		% -------------------------------------------------------
		function SaveHdf5(obj, fname, parent)

		% Arg 1
		if ~exist('fname', 'var') \|\| isempty(fname)
		error('Unable to save file. No file name given.')
		end

		% Arg 2
		if ~exist(fname, 'file')
		fid = H5F.create(fname, 'H5F_ACC_TRUNC', 'H5P_DEFAULT', 'H5P_DEFAULT');
		H5F.close(fid);

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		@@ -68,6 +68,11 @@ classdef MetaDataTagsClass < FileLoadSaveClass

		% -------------------------------------------------------
		function SaveHdf5(obj, fname, parent)
		% Arg 1
		if ~exist('fname', 'var') \|\| isempty(fname)
		error('Unable to save file. No file name given.')
		end

		if ~exist(fname, 'file')
		fid = H5F.create(fname, 'H5F_ACC_TRUNC', 'H5P_DEFAULT', 'H5P_DEFAULT');
		H5F.close(fid);