Add plotProbe2 display

LaunchChildGuiFromMenu('PlotProbeGUI', hObject, GetDatatype(handles), maingui.condition);

% --------------------------------------------------------------------

% function menuItemPlotProbe2_Callback(hObject, ~, handles)

% global maingui

%%%% It will be in the next release

% procElem = maingui.dataTree.currElem;

% % Derived data that we want to save in a Snirf file.

% % To save in a snirf file we need to create a SnirfClass

% % object. A SnirfClass object is DataTree's implementation 

% % of the Snirf format.  

% data(1) = procElem.procStream.output.dcAvg; 

function menuItemPlotProbe2_Callback(hObject, ~, handles)

global maingui

procElem = maingui.dataTree.currElem;

% Derived data that we want to save in a Snirf file.

% To save in a snirf file we need to create a SnirfClass

% object. A SnirfClass object is DataTree's implementation 

% of the Snirf format.  

data(1) = procElem.procStream.output.dcAvg; 

% data(2) = procElem.procStream.output.dod;

% 

% % To complete SnirfClass object arguments we need to supply these

% % which we get from acquired data of the first run associated with 

% % our procElem.

% probe = procElem.acquired.probe;

% stim = procElem.acquired.stim;

% metaDataTags = procElem.acquired.metaDataTags;

% 

% obj = SnirfClass(data, stim, probe, metaDataTags);

% 

% % call PlotProbe2 GUI

% PlotProbe2(obj);

% To complete SnirfClass object arguments we need to supply these

% which we get from acquired data of the first run associated with 

% our procElem.

if strcmp(procElem.type,'sess')

    maingui.dataTree.SetCurrElem(procElem.iGroup, procElem.iSubj, procElem.iSess, 1);

    maingui.dataTree.LoadCurrElem()

    procElem = maingui.dataTree.currElem;

    maingui.dataTree.SetCurrElem(procElem.iGroup, procElem.iSubj, procElem.iSess);

    maingui.dataTree.LoadCurrElem()

elseif strcmp(procElem.type,'subj')

    maingui.dataTree.SetCurrElem(procElem.iGroup, procElem.iSubj, 1, 1);

    maingui.dataTree.LoadCurrElem()

    procElem = maingui.dataTree.currElem;

     maingui.dataTree.SetCurrElem(procElem.iGroup, procElem.iSubj);

    maingui.dataTree.LoadCurrElem()

elseif strcmp(procElem.type,'group')

    maingui.dataTree.SetCurrElem(procElem.iGroup, 1, 1, 1);

    maingui.dataTree.LoadCurrElem()

    procElem = maingui.dataTree.currElem;

    maingui.dataTree.SetCurrElem(procElem.iGroup);

    maingui.dataTree.LoadCurrElem()

end

probe = procElem.acquired.probe;

stim = procElem.acquired.stim;

metaDataTags = procElem.acquired.metaDataTags;

obj = SnirfClass(data, stim, probe, metaDataTags);

% call PlotProbe2 GUI

PlotProbe2(obj);

# PlotProbe2

### Instructions to run PlotProbe2

1. Open Matlab

2. Go to PlotProbe2 folder on Matlab

3. Add PlotProbe2 to matlab path by running ``` addpath(genpath('.')) ``` command on matlab command window

4. Go to the folder where snirf file is located or use probe.snirf file present in the PlotProbe2 folder

5. Run below commands on matlab command window

``` 

obj = SnirfClass('probe.snirf');

PlotProbe2(obj);

```

6. Note that your filename could be different from ```probe.snirf```, so pass appropriate filename to ```SnirfClass```