Commit 9ec6068e authored by Alexander von Lühmann's avatar Alexander von Lühmann
Browse files

updated docu and added example processing streams

parent 5c085033
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+3 −4
Original line number Diff line number Diff line
@@ -12,11 +12,10 @@

% run
@ hmrR_Intensity2OD dod (data
@ hmrR_BandpassFilt dod (dod hpf %0.3f 0.01 lpf %0.3f 0.5
@ hmrR_BandpassFilt aux (aux hpf %0.3f 0.01 lpf %0.3f 0.5
@ hmrR_BandpassFilt dod (dod hpf %0.3f 0.00 lpf %0.3f 0.5
@ hmrR_BandpassFilt aux (aux hpf %0.3f 0.00 lpf %0.3f 0.5
@ hmrR_OD2Conc_new dc (dod,probe ppf %0.1f_%0.1f 1_1
@ hmrR_tCCA [Aaux,rcMap] (dc,aux,probe,iRun flagtCCA %d 1 flagICRegressors %d 0 tCCAparams %d_%d_%0.1f 3_2_0.3 tCCAaux_inx %d_%d_%d_%d_%d_%d_%d_%d 1_2_3_4_5_6_7_8 rhoSD_ssThresh %0.1f 15 runIdxResting %d 1
@ hmrR_tCCA [Aaux,rcMap] (dc,aux,probe,iRun flagtCCA %d 1 flagICRegressors %d 0 tCCAparams %d_%d_%0.1f 3_2_0.3 tCCAaux_inx %d_%d_%d_%d_%d_%d_%d_%d 1_2_3_4_5_6_7_8 rhoSD_ssThresh %0.1f 15 runIdxResting %d 1 tResting %d_%d 30_210
@ hmrR_GLM [dcAvg,dcAvgStd,nTrials,dcNew,dcResid,dcSum2,beta,R] (dc,stim,probe,mlActAuto,Aaux,tIncAuto,rcMap trange %0.1f_%0.1f -2_20 glmSolveMethod %d 1 idxBasis %d 2 paramsBasis %0.1f_%0.1f_%0.1f_%0.1f_%0.1f_%0.1f 0.1_3_10_1.8_3_10 rhoSD_ssThresh %0.1f 15 flagNuisanceRMethod %d 3 driftOrder %d 3 flagMotionCorrect %d 0
@ hmrR_BlockAvg [dcAvg,dcAvgStd,nTrials,dcSum2] (dc,stim trange %0.1f_%0.1f -2_20

+21 −0
Original line number Diff line number Diff line
% Homer3 (v1.20.1)

% group
@ hmrG_SubjAvg [dcAvg,nTrials] (dcAvgSubjs,nTrialsSubjs
@ hmrG_SubjAvgStd dcAvgStd (dcAvgSubjs


% subj
@ hmrS_RunAvg [dcAvg,nTrials] (dcAvgRuns,mlActRuns,nTrialsRuns 
@ hmrS_RunAvgStd2 dcAvgStd (dcAvgRuns,dcSum2Runs,mlActRuns,nTrialsRuns 


% run
@ hmrR_Intensity2OD dod (data
@ hmrR_BandpassFilt dod (dod hpf %0.3f 0.000 lpf %0.3f 0.5
@ hmrR_BandpassFilt aux (aux hpf %0.3f 0.000 lpf %0.3f 0.5
@ hmrR_OD2Conc_new dc (dod,probe ppf %0.1f_%0.1f 1_1
@ hmrR_tCCA [Aaux,rcMap] (dc,aux,probe,iRun flagtCCA %d 1 flagICRegressors %d 0 tCCAparams %d_%d_%0.1f 3_2_0.3 tCCAaux_inx %d_%d_%d_%d_%d_%d_%d_%d 1_2_3_4_5_6_7_8 rhoSD_ssThresh %0.1f 15 runIdxResting %d 1 tResting %d_%d 30_210
@ hmrR_GLM [dcAvg,dcAvgStd,nTrials,dcNew,dcResid,dcSum2,beta,R] (dc,stim,probe,mlActAuto,Aaux,tIncAuto,rcMap trange %0.1f_%0.1f -2_20 glmSolveMethod %d 1 idxBasis %d 1 paramsBasis %0.1f_%0.1f_%0.1f_%0.1f_%0.1f_%0.1f 0.5_0.5_0.0_0.0_0.0_0.0 rhoSD_ssThresh %0.1f 15 flagNuisanceRMethod %d 3 driftOrder %d 3 flagMotionCorrect %d 0