Merge pull request #22 from BUNPC/procstream-to-script (6a56fe91) · Commits · github_fork / Homer3

MainGUI/DisplayAxesSDG.m

+8 −8

Original line number	Diff line number	Diff line
		@@ -106,18 +106,18 @@ hCh = zeros(length(lstML),1);
		% Draw all channels
		for ii = 1:length(lstML)
		hCh(ii) = line2(SD.SrcPos(ml(lstML(ii),1),:), SD.DetPos(ml(lstML(ii),2),:), [], gridsize);
		if ismember(ii, lstIncl)
		% Draw included channel
		col = [1.00 1.00 1.00] * 0.85;
		lstyle = '-';
		if ismember(ii,lstExclAuto)
		% Draw auto-excluded channel
		col = [1.00 0.6 0.6];
		lstyle = '--';
		elseif ismember(ii, lstExclMan)
		% Draw manually excluded channel
		col = [1.00 1.00 1.00] * 0.85;
		lstyle = '--';
		elseif ismember(ii,lstExclAuto)
		% Draw auto-excluded channel
		elseif ismember(ii, lstIncl)
		% Draw included channel
		col = [1.00 1.00 1.00] * 0.85;
		lstyle = ':';
		lstyle = '-';
		end
		if ismember(ii, lstInvisible)
		lwidth = 1;
		@@ -145,7 +145,7 @@ if ~isempty(iSrcDet) && iSrcDet(1,1)~=0

		if ~isempty(iCh)

		if ~MeasListActMan(iCh2(idx))
		if ~MeasListActMan(iCh2(idx)) \|\| ~MeasListActAuto(iCh2(idx))
		lstyle = '--';
		else
		lstyle = '-';

MainGUI/MainGUI.fig

+3.58 KiB (86.3 KiB)

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MainGUI/MainGUI.m

+10 −0

Original line number	Diff line number	Diff line
		@@ -1713,3 +1713,13 @@ if isa(maingui.dataTree.currElem, 'RunClass')
		else
		errordlg('Select a run to reset its excluded channels and time points.','No run selected');
		end



		% --------------------------------------------------------------------
		function menuItemExportProcessingStreamScript_Callback(hObject, eventdata, handles)
		global maingui
		fname = uiputfile('*.m', 'Export Processing Stream to Script (.m)', 'processing_stream.m');
		if fname ~= 0
		exportProcessScript(fname, maingui.dataTree.currElem.procStream);
		end

Utils/exportProcessScript.m

0 → 100644

+77 −0

Original line number	Diff line number	Diff line
		function exportProcessScript(fname, procstream)
		if isa(procstream, 'ProcStreamClass')

		if length(procstream.fcalls) == 0
		return;
		end

		fid = fopen(fname, 'wt');

		if fid ~= -1

		inputs = {};

		% Write the header
		fprintf(fid, '%%{\n');
		fprintf(fid, 'The following input(s) to this processing stream must be defined:\n');
		for i = procstream.GetFcallsIdxs()
		argIn = procstream.GetInputArgs(i);
		for j = 1:length(argIn)
		if ~any(strcmp(inputs, argIn{j}))
		if ~exist(argIn{j},'var')
		fprintf(fid, '%s\n', argIn{j});
		inputs{end + 1} = argIn{j};
		end
		end
		end
		end
		fprintf(fid, '\n');
		fprintf(fid, 'A script which loads some inputs from an acquisition file (.snirf, .nirs) at acquisition_path\n');
		fprintf(fid, 'is provided below. Consult the Homer3 wiki https://github.com/BUNPC/Homer3/wiki on the\n');
		fprintf(fid, 'specified format of other function inputs.\n');

		fprintf(fid, '%%}\n');

		fprintf(fid, '\n');
		fprintf(fid, 'acquired_path = '''';\n');
		fprintf(fid, '\n');
		fprintf(fid, 'if ~isempty(acquired_path)\n');
		fprintf(fid, ' acquired = SnirfClass(acquired_path);\n');
		for i = 1:length(inputs)
		fprintf(fid, ' %s = acquired.%s;\n', inputs{i}, inputs{i});
		end
		fprintf(fid, 'end\n');
		fprintf(fid, '\n');

		% Write the processing stream
		for i = procstream.GetFcallsIdxs()
		argIn = procstream.GetInputArgs(i);
		for j = 1:length(argIn)
		if ~exist(argIn{j},'var')
		eval(sprintf('%s = procstream.input.GetVar(''%s'');', argIn{j}, argIn{j}));
		end
		end
		[sargin, p, sarginVal] = procstream.ParseInputParams(i);
		sargout = procstream.ParseOutputArgs(i);

		fprintf(fid, '%%{\n');
		fprintf(fid, procstream.fcalls(i).help);
		fprintf(fid, '%%}');

		fprintf(fid, '\n');
		fprintf(fid, '%s = %s%s%s);\n', sargout, procstream.GetFuncCallName(i), procstream.fcalls(i).argIn.str, sarginVal);
		fprintf(fid, '\n');
		end

		fprintf(fid, '\n');
		fclose(fid);

		else
		return;
		end

		else
		return;
		end

		end
		No newline at end of file

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