-- Fix setpaths gitSubmodulesUpdate not updating changes to submodules correctly

repoFull = filesepStandard_startup(repo,'full');

branch = gitGetBranch(repoFull);

submodules = parseGitSubmodulesFile(repoFull);

ii = 1;

cmds{ii,1} = sprintf('cd %s', repoFull); ii = ii+1;

cmds{ii,1} = sprintf('git config --global http.sslverify "false"'); ii = ii+1;

for jj = 1:size(submodules,1)

    cmds{ii+jj-1,1} = sprintf('cd %s', repoFull); ii = ii+1;

    cmds{ii+jj-1,1} = sprintf('cd %s', submodules{jj,3}); ii = ii+1;

    cmds{ii+jj-1,1} = sprintf('git pull origin %s', branch);

end

cmds{ii,1} = sprintf('git submodule update --init --recursive --remote'); ii = ii+1;

[errs, msgs] = exeShellCmds(cmds, preview);