-- Sync setpaths in DataTree with DataTree library (16805194) · Commits · github_fork / Homer3

DataTree/setpaths.m

+71 −26

Original line number	Diff line number	Diff line
		function setpaths(options)
		function setpaths(addremove)

		%
		% USAGE:
		%
		% % 1. Add all search paths for this repo
		% setpaths
		%
		% % 2. Same as 1.. Add all search paths for this repo
		% setpaths(1)
		%
		% % 3. Add all search paths for this repo while removing search
		% % paths of all similar workspaces
		% setpaths(2)
		%
		% % 4. Remove all search paths for this repo
		% setpaths(0)
		%
		currdir = pwd;
		@@ -17,37 +26,34 @@ try
		appname = 'DataTreeClass';

		% Parse arguments
		if ~exist('addremove','var')
		addremove = 1;
		if ~exist('options','var')
		options = '';
		elseif isnumeric(options)
		if options == 0
		addremove = 0;
		else
		options = '';
		end
		end

		% Add libraries on which DataTreeClass depends
		submodules = addDependenciesSearchPaths();
		d = addDependenciesSearchPaths();

		% Start logger only after adding library paths. Logger is in the Utils libary.
		logger = InitLogger([], [pwd, '/setpaths']);
		logger = Logger('setpaths');

		% Create list of possible known similar apps that may conflic with current
		% app
		appNameExclList = {'DataTree','AtlasViewerGUI','Homer3','Homer2_UI','brainScape','ResolveCommonFunctions'};
		appNameInclList = {};
		exclSearchList = {'.git','Data','Docs','_install','.app'};
		exclSearchList = {'.git','.idea','Data','Docs','_install','.app','submodules'};

		appThis = filesepStandard_startup(pwd);
		appThisPaths = findDotMFolders(appThis, exclSearchList);

		if addremove == 0
		if ~isempty(which('deleteNamespace.m'))
		deleteNamespace(appname);
		end
		removeSearchPaths(appThis);
		return;
		elseif addremove == 2
		appNameExclList = [appNameExclList, appNameInclList];
		appNameInclList = {};
		end

		appExclList = {};
		@@ -116,12 +122,12 @@ try
		end

		if ~isempty(which('setpaths_proprietary.m'))
		setpaths_proprietary(options);
		setpaths_proprietary(addremove);
		end

		warning('on','MATLAB:rmpath:DirNotFound');

		PrintSystemInfo(logger, ['DataTreeClass'; submodules(:,end)]);
		PrintSystemInfo(logger, ['DataTreeClass'; d]);
		logger.CurrTime('Setpaths completed on ');
		logger.Close();
		cd(currdir);
		@@ -139,10 +145,20 @@ end



		% ---------------------------------------------------
		function d = dependencies()
		d = {};
		submodules = parseGitSubmodulesFile(pwd);
		temp = submodules(:,1);
		for ii = 1:length(temp)
		[~, d{ii,1}] = fileparts(temp{ii});
		end


		% ---------------------------------------------------
		function setpermissions(appPath)
		if isunix() \|\| ismac()
		global logger
		if ~isempty(strfind(appPath, '/bin')) %#ok<*STREMP>
		cmd = sprintf('chmod 755 %s/*\n', appPath);
		logger.Write(cmd);
		@@ -164,7 +180,7 @@ if ischar(appPaths)
		else
		delimiter = ':';
		end
		appPaths = str2cell_startup(p, delimiter);
		appPaths = str2cell(p, delimiter);
		end
		for kk = 1:length(appPaths)
		if strfind(appPaths{kk}, '.git')
		@@ -208,24 +224,29 @@ printMethod(sprintf('REMOVED search paths for app %s\n', app));


		% ----------------------------------------------------
		function submodules = addDependenciesSearchPaths()
		global logger
		submodules = downloadDependencies();
		for ii = 1:size(submodules)
		submodulespath = [pwd, '/', submodules{ii,end}];
		submodulespath(submodulespath=='\') = '/';
		if ~exist(submodulespath,'dir')
		function d = addDependenciesSearchPaths()
		if exist([pwd, '/Utils/submodules'],'dir')
		addpath([pwd, '/Utils/submodules'],'-end');
		end
		d = dependencies();
		for ii = 1:length(d)
		rootpath = findFolder(pwd, d{ii});
		rootpath(rootpath=='\') = '/';
		if ispathvalid_startup([rootpath, '/Shared'],'dir')
		rootpath = [rootpath, '/Shared'];
		end
		if ~exist(rootpath,'dir')
		printMethod(sprintf('ERROR: Could not find required dependency %s\n', d{ii}));
		continue;
		end
		printMethod(sprintf('Adding searchpaths for submodule %s\n', submodulespath));
		addSearchPaths(submodulespath);
		addSearchPaths(rootpath);
		end




		% -----------------------------------------------------------------------------
		function [C,k] = str2cell_startup(str, delimiters, options)
		function [C,k] = str2cell(str, delimiters, options)

		% Option tells weather to keep leading whitespaces.
		% (Trailing whitespaces are always removed)
		@@ -287,6 +308,30 @@ else
		end




		% -------------------------------------------------------------------------
		function dirpath = findFolder(repo, dirname)
		dirpath = '';
		if ~exist('repo','var')
		repo = filesepStandard_startup(pwd);
		end
		dirpaths = findDotMFolders(repo, {'.git', '.idea'});

		for ii = 1:length(dirpaths)
		[~, f, e] = fileparts(dirpaths{ii}(1:end-1));
		if strcmp(dirname, [f,e])
		dirpath = dirpaths{ii};
		break;
		end
		if ispathvalid_startup([dirname, dirpaths{ii}])
		dirpath = dirpaths{ii};
		break;
		end
		end



		% -------------------------------------------------------------------------
		function dotmfolders = findDotMFolders(subdir, exclList)
		global logger

setpaths.m

+2 −4

Original line number	Diff line number	Diff line
		@@ -241,9 +241,7 @@ for ii = 1:length(d)
		end
		addSearchPaths(rootpath);
		end
		if exist([pwd, '/Utils/submodules'],'dir')
		addpath([pwd, '/Utils/submodules'],'-end');
		end

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