Commit be0197fc authored by tekath's avatar tekath
Browse files

Try different remotes bioc: approach.

parent ae238c16

DESCRIPTION

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@@ -11,7 +11,7 @@ LazyData: true 
Depends: R (>= 3.4.0)

Imports: Matrix, tximport, sparseDRIMSeq, stageR, rtracklayer, formattable, DT, Gviz, assertthat, scales, ggplot2, reshape2, BiocParallel, Matrix.utils, pheatmap, methods, GenomicRanges, htmltools, htmlwidgets, knitr, stringi 

Suggests: GenomeInfoDb, Seurat (>= 3.0.0), webshot, webshot2, magick

Remotes: github::TobiTekath/sparseDRIMSeq

Remotes: github::TobiTekath/sparseDRIMSeq, bioc::BiocParallel, bioc::GenomicRanges, bioc::Gviz, bioc::rtracklayer, bioc::stageR, bioc::tximport

RoxygenNote: 7.1.0

Roxygen: list(markdown = TRUE)

VignetteBuilder: knitr

README.Rmd

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@@ -19,10 +19,10 @@ knitr::opts_chunk$set( 
Install from GitHub:



```{r eval=F}

if(!requireNamespace(devtools){

    install.packages("devtools")

if(!requireNamespace("remotes", quietly = T)){

    install.packages("remotes")

}

devtools::install_github("TobiTekath/DTUrtle")

remotes::install_github("TobiTekath/DTUrtle")

```



## Basic workflow

README.md

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@@ -9,10 +9,10 @@ single-cell RNA-seq data.** 
Install from GitHub:



``` r

if(!requireNamespace(devtools){

    install.packages("devtools")

if(!requireNamespace("remotes", quietly = T)){

    install.packages("remotes")

}

devtools::install_github("TobiTekath/DTUrtle")

remotes::install_github("TobiTekath/DTUrtle")

```



## Basic workflow

docs/index.html

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<h2 class="hasAnchor">

<a href="#installation" class="anchor"></a>Installation</h2>

<p>Install from GitHub:</p>

<div class="sourceCode" id="cb1"><pre class="r">if(!requireNamespace(devtools){

    install.packages("devtools")

<div class="sourceCode" id="cb1"><pre class="r"><span class="kw">if</span>(!<span class="fu"><a href="https://rdrr.io/r/base/ns-load.html">requireNamespace</a></span>(<span class="st">"remotes"</span>, <span class="kw">quietly</span> <span class="kw">=</span> <span class="no">T</span>)){

    <span class="fu"><a href="https://rdrr.io/r/utils/install.packages.html">install.packages</a></span>(<span class="st">"remotes"</span>)

}

devtools::install_github("TobiTekath/DTUrtle")</pre></div>

<span class="kw pkg">remotes</span><span class="kw ns">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html">install_github</a></span>(<span class="st">"TobiTekath/DTUrtle"</span>)</pre></div>

</div>

<div id="basic-workflow" class="section level2">

<h2 class="hasAnchor">

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