Version 1.0.0 - published in Bioinformatics.

Type: Package

URL: https://github.com/TobiTekath/DTUrtle, https://tobitekath.github.io/DTUrtle

Title: Differential Transcript Usage analysis of bulk and single-cell RNA-seq data

Version: 0.8.1

Version: 1.0.0

Authors@R: c(person(given = "Tobias", family = "Tekath", role = c("aut", "cre"), email = "tobias.tekath@wwu.de", comment = c(ORCID = "0000-0002-9315-5452")))

Description: Easily perform and visualize Differential Transcript Usage (DTU) analysis for bulk or single-cell RNA-seq data, utilizing transcript level quantification counts.

License: GPL (>= 3) + file LICENSE

DTUrtle News

================

# DTUrtle 1.0.0

## Changes

  - DTUrtle manuscript got published in Bioinformatics:

      - added citation information.

      - added DOI in Readme.

# DTUrtle 0.8.1

## Changes

.onAttach <- function(libname, pkgname){

    cit <- utils::citation(pkgname)

    attr(cit, "mfooter") <- paste0("Use citation(",pkgname,") for BibTeX information.")

    txt<-paste0(c(format(cit,"citation", bibtex=FALSE)),collapse="\n\n")

    txt <- gsub("  ","\t", gsub(". ",".\n\t",txt,fixed=TRUE))

    packageStartupMessage(txt)

}

your species is needed (which is also required for the transcript-level

quantification).

## More information

For more information about the used methods and package capabilities,

please refer to the publication in Bioinformatics:

[Tekath, T., & Dugas, M. (2021). Differential transcript usage analysis

of bulk and single-cell RNA-seq data with

DTUrtle.](https://doi.org/10.1093/bioinformatics/btab629)

-----

## Installation

citHeader("To cite DTUrtle in publications use:")

citEntry(

  entry    = "article",

  title    = "Differential transcript usage analysis of bulk and single-cell RNA-seq data with {DTUrtle}",

  author   = personList(person(given="Tobias", family="Tekath"),

                   person(given="Martin", family="Dugas")),

  journal  = "Bioinformatics",

  year     = "2021",

  doi      = "10.1093/bioinformatics/btab629",

  url      = "https://doi.org/10.1093/bioinformatics/btab629",

  textVersion = paste("Tobias Tekath, Martin Dugas.",

  "Differential transcript usage analysis of bulk and single-cell RNA-seq data with DTUrtle.",

  "Bioinformatics, 2021.",

  "https://doi.org/10.1093/bioinformatics/btab629.")

)