readd remotes decoration (782f2b57) · Commits · github_fork / DTUrtle

.github/workflows/R-CMD-check.yaml

+8 −0

Original line number	Diff line number	Diff line
		@@ -27,6 +27,7 @@ jobs:
		R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
		GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
		R_KEEP_PKG_SOURCE: yes
		UPGRADE_PKGS: ${{ matrix.config.r == '3.6' }}

		steps:
		- uses: actions/checkout@v2
		@@ -54,6 +55,13 @@ jobs:
		remotes::install_cran("rcmdcheck")
		shell: Rscript {0}

		- name: glmGamPoi and Seurat for R < 4.0
		if: runner.os == "Linux" && ${{ env.UPGRADE_PKGS }}
		run: \|
		remotes::install_github("const-ae/glmGamPoi")
		remotes::install_version("Seurat", version="3.0.0")
		shell: Rscript {0}

		- uses: r-lib/actions/check-r-package@v1

		- name: Upload check results

+1 −1

Original line number	Diff line number	Diff line
		@@ -40,7 +40,7 @@ Suggests:
		magick,
		glmGamPoi,
		apeglm
		Remotes: TobiTekath/sparseDRIMSeq, BiocParallel, GenomicRanges, GenomeInfoDb, Gviz, rtracklayer, stageR, tximport, rstudio/webshot2, DESeq2, glmGamPoi, apeglm, GenomicFeatures
		Remotes: github::TobiTekath/sparseDRIMSeq, bioc::BiocParallel, bioc::GenomicRanges, bioc::GenomeInfoDb, bioc::Gviz, bioc::rtracklayer, bioc::stageR, bioc::tximport, github::rstudio/webshot2, bioc::DESeq2, bioc::glmGamPoi, bioc::apeglm, bioc::GenomicFeatures
		RoxygenNote: 7.1.1
		Roxygen: list(markdown = TRUE)
		VignetteBuilder: knitr