Package: DTUrtle
Type: Package
URL: https://github.com/TobiTekath/DTUrtle, https://tobitekath.github.io/DTUrtle
Title: Differential Transcript Usage analysis of bulk and single-cell RNA-seq data
Version: 1.0.2
Authors@R: c(person(given = "Tobias", family = "Tekath", role = c("aut", "cre"), email = "tobias.tekath@wwu.de", comment = c(ORCID = "0000-0002-9315-5452")))
Description: Easily perform and visualize Differential Transcript Usage (DTU) analysis for bulk or single-cell RNA-seq data, utilizing transcript level quantification counts.
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6.0), sparseDRIMSeq
Imports: 
    Matrix,
    tximport,
    stageR,
    rtracklayer,
    DESeq2,
    GenomicFeatures,
    formattable,
    DT,
    Gviz,
    assertthat,
    scales,
    ggplot2,
    reshape2,
    BiocParallel,
    Matrix.utils,
    pheatmap,
    methods,
    GenomicRanges,
    GenomeInfoDb,
    htmltools,
    htmlwidgets,
    knitr,
    lifecycle
Suggests: 
    Seurat (>= 3.0.0),
    webshot,
    webshot2,
    magick,
    glmGamPoi,
    apeglm
Remotes: github::TobiTekath/sparseDRIMSeq, bioc::BiocParallel, bioc::GenomicRanges, bioc::GenomeInfoDb, bioc::Gviz, bioc::rtracklayer, bioc::stageR, bioc::tximport, github::rstudio/webshot2, bioc::DESeq2, bioc::glmGamPoi, bioc::apeglm, bioc::GenomicFeatures
RoxygenNote: 7.1.1
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
RdMacros: lifecycle
