Commits · dev · Chaos / Cutandrun

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Jun 08, 2022
- Merge pull request #131 from luslab/dev · f02083e7
  Chris Cheshire authored Jun 08, 2022
  f02083e7
- Updated modules · ca92a9b8
  Chris Cheshire authored Jun 08, 2022
  
  ca92a9b8
- bumped version to 2.0 · 90b52008
  Chris Cheshire authored Jun 08, 2022
  
  90b52008
- updated all the test data paths · 9c8abf9a
  Chris Cheshire authored Jun 08, 2022
  
  9c8abf9a
- Comment remove · f3005efc
  Chris Cheshire authored Jun 08, 2022
  
  f3005efc
- Merge pull request #130 from luslab/dev · dbaad8c7
  Chris Cheshire authored Jun 08, 2022
  dbaad8c7
- Added more versioning into pipeline · 1e27946d
  Chris Cheshire authored Jun 08, 2022
  
  1e27946d
- Added versioning to cut and sort · f71699a1
  Chris Cheshire authored Jun 08, 2022
  
  f71699a1
Jun 01, 2022
- Merge pull request #129 from luslab/dev · b5c19c10
  Chris Cheshire authored Jun 01, 2022
  b5c19c10
May 30, 2022
- Updated samtools version · e58873cf
  Chris Cheshire authored May 30, 2022
  
  e58873cf
- Updated versions · cb1b89a9
  Chris Cheshire authored May 30, 2022
  
  cb1b89a9
- Updated multiqc version · ce16be30
  Chris Cheshire authored May 30, 2022
  
  ce16be30
- Updated version output · eb69e86d
  Chris Cheshire authored May 30, 2022
  
  eb69e86d
- Modules config now uses "${params.publish_dir_mode}" instead of copy · 30707ace
  Chris Cheshire authored May 30, 2022
  
  30707ace
- removed static reports folder · 892b5acd
  Chris Cheshire authored May 30, 2022
  
  892b5acd
- Updated to old zenodo · 8af48a4f
  Chris Cheshire authored May 30, 2022
  
  8af48a4f
May 29, 2022
- Merge remote-tracking branch 'nf-core/dev' into dev · ceb8988b
  Chris Cheshire authored May 29, 2022
  
  ceb8988b
May 27, 2022
- Merge pull request #128 from drpatelh/ubuntu · 89a1af53
  Chris Cheshire authored May 27, 2022
  89a1af53
- Replace gawk containers with ubuntu · c48d5472
  Harshil Patel authored May 27, 2022
  
  c48d5472
May 26, 2022
- Merge pull request #127 from luslab/dev · 5165e836
  Chris Cheshire authored May 26, 2022
  5165e836
- Commenting update · 8246b09b
  Chris Cheshire authored May 26, 2022
  
  8246b09b
- Macs2 will now use the igenomes genome parameter · 2f7e4997
  Chris Cheshire authored May 26, 2022
  
  2f7e4997
- Commenting and doc updates · a4ccca9d
  Chris Cheshire authored May 25, 2022
  
  a4ccca9d
May 25, 2022
- Corrected markdown · e118510a
  Chris Cheshire authored May 25, 2022
  
  e118510a
- Corrected dev folder · e587d4d4
  Chris Cheshire authored May 25, 2022
  
  e587d4d4
- Fixed bug where duplicates would not be removed · fe419758
  Chris Cheshire authored May 25, 2022
  
  fe419758
May 24, 2022
- Merge pull request #124 from luslab/dev · b1888c3b
  Chris Cheshire authored May 24, 2022
  b1888c3b
- Fix for bt2 update · 1795392b
  Chris Cheshire authored May 24, 2022
  
  1795392b
- Updated bowtie2 · 6be004e4
  Chris Cheshire authored May 24, 2022
  
  6be004e4
May 20, 2022
- updated module · 50fbea73
  Chris Cheshire authored May 19, 2022
  
  50fbea73
- Revert bt2 update · 071940d8
  Chris Cheshire authored May 19, 2022
  
  071940d8
May 19, 2022
- updated bowtie2 · 856455f0
  Chris Cheshire authored May 19, 2022
  
  856455f0
- Fixed templates · 4081863f
  Chris Cheshire authored May 19, 2022
  
  4081863f
- Prettier updates · 37376a8a
  Chris Cheshire authored May 19, 2022
  
  37376a8a
- Commenting · e6293d93
  Chris Cheshire authored May 19, 2022
  
  e6293d93
- Simplfied param checking for nodes using enums · ba81d1bd
  Chris Cheshire authored May 19, 2022
  
  ba81d1bd
- comment change · fb91f9c5
  Chris Cheshire authored May 19, 2022
  
  fb91f9c5
- Updated with target.filtered · db626edc
  Chris Cheshire authored May 19, 2022
  
  db626edc
- Updated botwie2 params to fully verbose · a6e594a2
  Chris Cheshire authored May 19, 2022
  
  a6e594a2
- Added check for legacy sample sheet · fe9bd545
  Chris Cheshire authored May 19, 2022
  
  fe9bd545

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