Commit fe8034e7 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

removed chr7 test

parent bf395647
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conf/test_hg38_chr7.config

deleted100644 → 0
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/*
========================================================================================
    Nextflow config file for running minimal tests
========================================================================================
    Defines input files and everything required to run a more robust test.

    Use as follows:
        nextflow run nf-core/cutandrun -profile test_hg38_chr7,<docker/singularity>
        
----------------------------------------------------------------------------------------
*/

params {
  config_profile_name        = 'GSE145187 hg38-chr7'
  config_profile_description = 'Runs on full data for GSE145187 but just on chr7 of hg38'

  genome = 'GRCh38'
  input = 'https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/samplesheet/test-GSE145187-all.csv'
  fasta = 'https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/reference/genomes/hg38-chr7.fa.gz'
}
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@@ -182,8 +182,6 @@ profiles {

    
    test_full      { includeConfig "conf/test_full.config"      }
    test_hg38_chr7 { includeConfig "conf/test_hg38_chr7.config" }

}

// Load igenomes.config if required