Loading .github/workflows/ci.yml +15 −9 Original line number Original line Diff line number Diff line Loading @@ -49,9 +49,11 @@ jobs: wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz - name: Run pipeline - name: Run Pipeline run: | uses: Wandalen/wretry.action@v1.0.11 nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip with: command: nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip attempt_limit: 2 ############################## ############################## ### LARGE INTEGRATION TEST ### ### LARGE INTEGRATION TEST ### Loading Loading @@ -89,9 +91,11 @@ jobs: wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz - name: Run pipeline with test data - name: Run Pipeline run: | uses: Wandalen/wretry.action@v1.0.11 nextflow run ${GITHUB_WORKSPACE} -profile docker,test_full_small_local_zip with: command: nextflow run ${GITHUB_WORKSPACE} -profile docker,test_full_small_local_zip attempt_limit: 2 ##################################### ##################################### ### EDGE VERSION INTEGRATION TEST ### ### EDGE VERSION INTEGRATION TEST ### Loading Loading @@ -127,9 +131,11 @@ jobs: wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz - name: Run pipeline with test data - name: Run Pipeline run: | uses: Wandalen/wretry.action@v1.0.11 nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip with: command: nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip attempt_limit: 2 ############################## ############################## ### UNIT TESTS ### ### UNIT TESTS ### Loading Loading
.github/workflows/ci.yml +15 −9 Original line number Original line Diff line number Diff line Loading @@ -49,9 +49,11 @@ jobs: wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz - name: Run pipeline - name: Run Pipeline run: | uses: Wandalen/wretry.action@v1.0.11 nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip with: command: nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip attempt_limit: 2 ############################## ############################## ### LARGE INTEGRATION TEST ### ### LARGE INTEGRATION TEST ### Loading Loading @@ -89,9 +91,11 @@ jobs: wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz - name: Run pipeline with test data - name: Run Pipeline run: | uses: Wandalen/wretry.action@v1.0.11 nextflow run ${GITHUB_WORKSPACE} -profile docker,test_full_small_local_zip with: command: nextflow run ${GITHUB_WORKSPACE} -profile docker,test_full_small_local_zip attempt_limit: 2 ##################################### ##################################### ### EDGE VERSION INTEGRATION TEST ### ### EDGE VERSION INTEGRATION TEST ### Loading Loading @@ -127,9 +131,11 @@ jobs: wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz wget -q https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz - name: Run pipeline with test data - name: Run Pipeline run: | uses: Wandalen/wretry.action@v1.0.11 nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip with: command: nextflow run ${GITHUB_WORKSPACE} -profile docker,test_local_zip attempt_limit: 2 ############################## ############################## ### UNIT TESTS ### ### UNIT TESTS ### Loading
