Fixed save ref tests (e46a7359) · Commits · Chaos / Cutandrun

conf/modules.config

+26 −20

Original line number	Diff line number	Diff line
		@@ -400,6 +400,7 @@ if(params.run_remove_dups) {
		========================================================================================
		*/

		if (params.run_alignment) {
		process {
		withName: 'NFCORE_CUTANDRUN:CUTANDRUN:ANNOTATE_BT2_META:AWK_SCRIPT' {
		ext.suffix = ".target"
		@@ -414,7 +415,11 @@ process {
		enabled: false
		]
		}
		}
		}

		if (params.run_mark_dups) {
		process {
		withName: 'NFCORE_CUTANDRUN:CUTANDRUN:ANNOTATE_DEDUP_META:AWK' {
		ext.suffix = ".awk"
		ext.command = "'/^[^#]/{print}'"
		@@ -424,6 +429,7 @@ process {
		]
		}
		}
		}

		/*
		========================================================================================
		@@ -792,7 +798,7 @@ if(params.run_reporting) {
		}
		}

		if (!params.run_multiqc) {
		if (params.run_multiqc) {
		process {
		withName: "NFCORE_CUTANDRUN:CUTANDRUN:MULTIQC" {
		ext.args = params.multiqc_title ? "-v --title \"$params.multiqc_title\"" : '-v'

+9 −9

Original line number	Diff line number	Diff line
		@@ -5,12 +5,12 @@
		- verify_output_save
		- verify_output_save_ref
		files:
		- path: results/00_genome/target/hg38-chr20-genes.bed
		- path: results/00_genome/target/hg38-chr20-genes.gtf
		- path: results/00_genome/target/hg38-chr20.fa
		- path: results/00_genome/target/hg38-chr20.fa.fai
		- path: results/00_genome/target/hg38-chr20.fa.sizes
		- path: results/00_genome/target/index/hg38-chr20-bowtie2/hg38-chr20.1.bt2
		- path: results/00_genome/spikein/e_coli_U00096_3.fa
		- path: results/00_genome/spikein/e_coli_U00096_3.fa.sizes
		- path: results/00_genome/spikein/index/e_coli_U00096_3/e_coli_U00096_3.1.bt2
		No newline at end of file
		- path: results/00_genome/hg38-chr20-genes.bed
		- path: results/00_genome/hg38-chr20-genes.gtf
		- path: results/00_genome/hg38-chr20.fa
		- path: results/00_genome/hg38-chr20.fa.fai
		- path: results/00_genome/hg38-chr20.fa.sizes
		- path: results/00_genome/index/hg38-chr20-bowtie2/hg38-chr20.1.bt2
		- path: results/00_genome/e_coli_U00096_3.fa
		- path: results/00_genome/e_coli_U00096_3.fa.sizes
		- path: results/00_genome/index/e_coli_U00096_3/e_coli_U00096_3.1.bt2
		No newline at end of file