ci updates

    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/samplesheet/test-GSE145187-small.csv'

    // Genome references

    fasta              = 'hg38-chr20.fa.gz'

    bowtie2            = 'hg38-chr20-bowtie2.tar.gz'

    gtf                = 'hg38-chr20-genes.gtf.gz'

    gene_bed           = 'hg38-chr20-genes.bed.gz'

    fasta              = '/home/runner/work/cutandrun/cutandrun/hg38-chr20.fa.gz'

    bowtie2            = '/home/runner/work/cutandrun/cutandrun/hg38-chr20-bowtie2.tar.gz'

    gtf                = '/home/runner/work/cutandrun/cutandrun/hg38-chr20-genes.gtf.gz'

    gene_bed           = '/home/runner/work/cutandrun/cutandrun/hg38-chr20-genes.bed.gz'

    blacklist          = "${projectDir}/assets/blacklists/hg38-blacklist.bed"

    spikein_fasta      = 'e_coli_U00096_3.fa.gz'

    spikein_bowtie2    = 'e_coli_U00096_3.tar.gz'

    spikein_fasta      = '/home/runner/work/cutandrun/cutandrun/e_coli_U00096_3.fa.gz'

    spikein_bowtie2    = '/home/runner/work/cutandrun/cutandrun/e_coli_U00096_3.tar.gz'

    minimum_alignment_q_score = 10

}

 No newline at end of file