Commit d336af55 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Module updates

parent 4c824cac

modules/nf-core/modules/samtools/idxstats/main.nf

+1 −0
Original line number Diff line number Diff line
@@ -24,6 +24,7 @@ process SAMTOOLS_IDXSTATS { 
        idxstats \\

        $bam \\

        > ${bam}.idxstats



    cat <<-END_VERSIONS > versions.yml

    "${task.process}":

        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')

modules/nf-core/modules/samtools/index/main.nf

+1 −0
Original line number Diff line number Diff line
@@ -27,6 +27,7 @@ process SAMTOOLS_INDEX { 
        -@ ${task.cpus-1} \\

        $args \\

        $input



    cat <<-END_VERSIONS > versions.yml

    "${task.process}":

        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')

modules/nf-core/modules/samtools/stats/main.nf

+1 −0
Original line number Diff line number Diff line
@@ -28,6 +28,7 @@ process SAMTOOLS_STATS { 
        ${reference} \\

        ${input} \\

        > ${input}.stats



    cat <<-END_VERSIONS > versions.yml

    "${task.process}":

        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')

modules/nf-core/modules/samtools/view/main.nf

+1 −0
Original line number Diff line number Diff line
@@ -35,6 +35,7 @@ process SAMTOOLS_VIEW { 
        $input \\

        $args2 \\

        > ${prefix}.${file_type}



    cat <<-END_VERSIONS > versions.yml

    "${task.process}":

        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')

modules/nf-core/modules/seacr/callpeak/main.nf

+1 −0
Original line number Diff line number Diff line
@@ -30,6 +30,7 @@ process SEACR_CALLPEAK { 
        $function_switch \\

        $args \\

        $prefix



    cat <<-END_VERSIONS > versions.yml

    "${task.process}":

        seacr: $VERSION

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